Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ddb1Q3U1J4 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Gm20949-201ENSMUST00000206478 952 ntBASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddb1Q3U1J4 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 AC147366.1-201ENSMUST00000227671 852 ntBASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddb1Q3U1J4 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Gm11185-201ENSMUST00000117732 1007 ntBASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Gm5312-201ENSMUST00000203728 547 ntBASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 AC155252.2-201ENSMUST00000226946 680 ntBASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddb1Q3U1J4 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ddb1Q3U1J4 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Ddb1Q3U1J4 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddb1Q3U1J4 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddb1Q3U1J4 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddb1Q3U1J4 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Gm13597-201ENSMUST00000121239 375 ntBASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms