Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Gm18025-201ENSMUST00000221733 862 ntBASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 AC124581.1-201ENSMUST00000225416 1399 ntBASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC15.85■□□□□ 0.13
Col28a1Q2UY11 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Gm21362-201ENSMUST00000194272 928 ntBASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Gm42545-201ENSMUST00000202755 922 ntBASIC15.84■□□□□ 0.13
Col28a1Q2UY11 AC156016.1-201ENSMUST00000227190 1035 ntBASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Gm10819-201ENSMUST00000099988 561 ntBASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col28a1Q2UY11 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col28a1Q2UY11 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col28a1Q2UY11 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col28a1Q2UY11 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Gm13559-201ENSMUST00000120476 863 ntBASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col28a1Q2UY11 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Gm11539-201ENSMUST00000119837 557 ntBASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Gm13436-201ENSMUST00000120418 567 ntBASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Gm44616-201ENSMUST00000206417 1732 ntBASIC15.82■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms