Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 App-207ENSMUST00000227737 2827 ntBASIC19.51■□□□□ 0.71
Rfx1P48377 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC19.51■□□□□ 0.71
Rfx1P48377 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Gm42901-201ENSMUST00000197735 3171 ntBASIC19.5■□□□□ 0.71
Rfx1P48377 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC19.5■□□□□ 0.71
Rfx1P48377 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Rfx1P48377 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.5■□□□□ 0.71
Rfx1P48377 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.5■□□□□ 0.71
Rfx1P48377 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 Ccdc166-201ENSMUST00000182172 2584 ntBASIC19.5■□□□□ 0.71
Rfx1P48377 Zkscan3-208ENSMUST00000224820 5398 ntBASIC19.5■□□□□ 0.71
Rfx1P48377 Ntrk2-205ENSMUST00000224402 2284 ntBASIC19.5■□□□□ 0.71
Rfx1P48377 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC19.5■□□□□ 0.71
Rfx1P48377 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx1P48377 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC19.49■□□□□ 0.71
Rfx1P48377 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Rfx1P48377 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC19.49■□□□□ 0.71
Rfx1P48377 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC19.49■□□□□ 0.71
Rfx1P48377 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Rfx1P48377 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx1P48377 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
Rfx1P48377 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
Rfx1P48377 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Gm7791-201ENSMUST00000219066 539 ntBASIC19.48■□□□□ 0.71
Rfx1P48377 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.48■□□□□ 0.71
Rfx1P48377 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
Rfx1P48377 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx1P48377 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Rfx1P48377 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Rfx1P48377 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Rfx1P48377 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Rfx1P48377 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Gm9867-201ENSMUST00000192212 2647 ntBASIC19.47■□□□□ 0.71
Rfx1P48377 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx1P48377 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Rfx1P48377 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms