Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC32.64■■■□□ 2.82
Usp40Q8BWR4 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
Usp40Q8BWR4 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Usp40Q8BWR4 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC32.62■■■□□ 2.81
Usp40Q8BWR4 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Usp40Q8BWR4 Gm11687-201ENSMUST00000118911 886 ntBASIC32.62■■■□□ 2.81
Usp40Q8BWR4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC32.61■■■□□ 2.81
Usp40Q8BWR4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Usp40Q8BWR4 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC32.6■■■□□ 2.81
Usp40Q8BWR4 Gm12818-201ENSMUST00000117562 1349 ntBASIC32.6■■■□□ 2.81
Usp40Q8BWR4 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Usp40Q8BWR4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Usp40Q8BWR4 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
Usp40Q8BWR4 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC32.59■■■□□ 2.81
Usp40Q8BWR4 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
Usp40Q8BWR4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC32.58■■■□□ 2.81
Usp40Q8BWR4 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC32.58■■■□□ 2.81
Usp40Q8BWR4 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Usp40Q8BWR4 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
Usp40Q8BWR4 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
Usp40Q8BWR4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC32.55■■■□□ 2.8
Usp40Q8BWR4 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Usp40Q8BWR4 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC32.54■■■□□ 2.8
Usp40Q8BWR4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Usp40Q8BWR4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC32.52■■■□□ 2.8
Usp40Q8BWR4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
Usp40Q8BWR4 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Usp40Q8BWR4 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
Usp40Q8BWR4 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Usp40Q8BWR4 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Gm14121-201ENSMUST00000121441 1380 ntBASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Gm12366-201ENSMUST00000121722 873 ntBASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Gm5786-201ENSMUST00000085368 882 ntBASIC32.47■■■□□ 2.79
Usp40Q8BWR4 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Usp40Q8BWR4 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
Usp40Q8BWR4 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
Usp40Q8BWR4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Usp40Q8BWR4 Gm37847-201ENSMUST00000192163 1497 ntBASIC32.45■■■□□ 2.79
Usp40Q8BWR4 Gm31748-201ENSMUST00000194938 1497 ntBASIC32.45■■■□□ 2.79
Usp40Q8BWR4 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC32.45■■■□□ 2.79
Usp40Q8BWR4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
Usp40Q8BWR4 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
Usp40Q8BWR4 Gm9812-201ENSMUST00000061934 968 ntBASIC32.44■■■□□ 2.78
Usp40Q8BWR4 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
Usp40Q8BWR4 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
Usp40Q8BWR4 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC32.43■■■□□ 2.78
Usp40Q8BWR4 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Usp40Q8BWR4 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Usp40Q8BWR4 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Usp40Q8BWR4 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC32.42■■■□□ 2.78
Usp40Q8BWR4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC32.42■■■□□ 2.78
Usp40Q8BWR4 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Usp40Q8BWR4 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Usp40Q8BWR4 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
Usp40Q8BWR4 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
Usp40Q8BWR4 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Usp40Q8BWR4 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Usp40Q8BWR4 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Usp40Q8BWR4 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Usp40Q8BWR4 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
Usp40Q8BWR4 AC122317.2-201ENSMUST00000218708 1248 ntBASIC32.38■■■□□ 2.77
Usp40Q8BWR4 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
Usp40Q8BWR4 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC32.37■■■□□ 2.77
Usp40Q8BWR4 Gm27502-201ENSMUST00000183495 199 ntBASIC32.37■■■□□ 2.77
Usp40Q8BWR4 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Usp40Q8BWR4 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
Usp40Q8BWR4 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC32.36■■■□□ 2.77
Usp40Q8BWR4 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
Usp40Q8BWR4 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
Usp40Q8BWR4 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Usp40Q8BWR4 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
Usp40Q8BWR4 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Usp40Q8BWR4 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC32.34■■■□□ 2.77
Usp40Q8BWR4 Gm9910-201ENSMUST00000195385 1550 ntBASIC32.33■■■□□ 2.77
Usp40Q8BWR4 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
Usp40Q8BWR4 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC32.29■■■□□ 2.76
Usp40Q8BWR4 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
Usp40Q8BWR4 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Usp40Q8BWR4 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
Usp40Q8BWR4 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Usp40Q8BWR4 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Usp40Q8BWR4 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
Usp40Q8BWR4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC32.26■■■□□ 2.76
Usp40Q8BWR4 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC32.26■■■□□ 2.75
Usp40Q8BWR4 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC32.26■■■□□ 2.75
Usp40Q8BWR4 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC32.25■■■□□ 2.75
Usp40Q8BWR4 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Usp40Q8BWR4 AC151971.4-201ENSMUST00000214717 704 ntBASIC32.24■■■□□ 2.75
Usp40Q8BWR4 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Usp40Q8BWR4 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Usp40Q8BWR4 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Usp40Q8BWR4 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Usp40Q8BWR4 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Usp40Q8BWR4 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Usp40Q8BWR4 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms