Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC19.21■□□□□ 0.67
Hmgb3O54879 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb3O54879 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb3O54879 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb3O54879 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb3O54879 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb3O54879 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb3O54879 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb3O54879 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb3O54879 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb3O54879 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Hmgb3O54879 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb3O54879 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb3O54879 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb3O54879 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb3O54879 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb3O54879 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb3O54879 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb3O54879 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb3O54879 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb3O54879 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb3O54879 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb3O54879 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.66
Hmgb3O54879 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb3O54879 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb3O54879 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb3O54879 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb3O54879 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb3O54879 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgb3O54879 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgb3O54879 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgb3O54879 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgb3O54879 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
Hmgb3O54879 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgb3O54879 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgb3O54879 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgb3O54879 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Hmgb3O54879 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Hmgb3O54879 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Hmgb3O54879 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.11■□□□□ 0.65
Hmgb3O54879 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Hmgb3O54879 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Hmgb3O54879 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgb3O54879 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.1■□□□□ 0.65
Hmgb3O54879 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgb3O54879 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgb3O54879 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Hmgb3O54879 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgb3O54879 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgb3O54879 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.09■□□□□ 0.65
Hmgb3O54879 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgb3O54879 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgb3O54879 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Hmgb3O54879 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgb3O54879 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Hmgb3O54879 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Hmgb3O54879 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Hmgb3O54879 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Hmgb3O54879 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Hmgb3O54879 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hmgb3O54879 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hmgb3O54879 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hmgb3O54879 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hmgb3O54879 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hmgb3O54879 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hmgb3O54879 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Hmgb3O54879 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Hmgb3O54879 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Hmgb3O54879 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Hmgb3O54879 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Hmgb3O54879 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Hmgb3O54879 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.05■□□□□ 0.64
Hmgb3O54879 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Hmgb3O54879 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Hmgb3O54879 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Hmgb3O54879 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Hmgb3O54879 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Hmgb3O54879 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Hmgb3O54879 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Hmgb3O54879 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Hmgb3O54879 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Hmgb3O54879 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Hmgb3O54879 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Hmgb3O54879 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Hmgb3O54879 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Hmgb3O54879 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Hmgb3O54879 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Hmgb3O54879 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Hmgb3O54879 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Hmgb3O54879 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Hmgb3O54879 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Hmgb3O54879 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Hmgb3O54879 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC19.01■□□□□ 0.63
Hmgb3O54879 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Hmgb3O54879 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.01■□□□□ 0.63
Hmgb3O54879 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Hmgb3O54879 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Hmgb3O54879 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19■□□□□ 0.63
Hmgb3O54879 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Hmgb3O54879 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 117.5 ms