Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MTND1P20-201ENST00000430341 950 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 NDUFB4P6-201ENST00000436819 366 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 RPL35AP22-201ENST00000436855 335 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 HMGB3P11-201ENST00000440127 604 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 COX6CP2-201ENST00000444980 225 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 MTCYBP3-201ENST00000445588 1137 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC097262.1-201ENST00000452559 548 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 RPL21P10-201ENST00000463521 490 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC112198.1-201ENST00000505369 1220 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC112673.1-201ENST00000513168 575 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 ELOCP32-201ENST00000548625 324 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 DNAJC8P1-201ENST00000554535 372 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 ISCA1P3-201ENST00000577104 373 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC078899.3-201ENST00000599065 212 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AL031985.2-201ENST00000600955 480 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AL442067.2-201ENST00000614033 363 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC008993.2-201ENST00000631744 806 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC104454.1-201ENST00000421341 1401 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC009487.2-201ENST00000420969 6821 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC012321.1-201ENST00000561622 1588 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 DDX10P1-201ENST00000448545 1933 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 Y_RNA.302-201ENST00000364997 102 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 SNORA36C-201ENST00000384289 132 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 U3.19-201ENST00000390893 196 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 RNU6-1197P-201ENST00000391183 107 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 RPL7P10-201ENST00000417407 739 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AL445669.1-201ENST00000426743 755 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AL008629.1-201ENST00000438615 184 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 FAM103A2P-201ENST00000444122 354 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AL590664.1-201ENST00000448065 339 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AP004247.1-201ENST00000531556 1289 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 NCAPGP2-201ENST00000557911 754 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AC002400.1-201ENST00000569310 726 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 MIR544B-201ENST00000582372 78 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AC068313.1-201ENST00000604028 1008 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AL603758.1-201ENST00000618654 241 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AL031667.3-201ENST00000620124 655 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AC019226.1-201ENST00000625666 515 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 AC073476.4-201ENST00000628409 72 ntBASIC2.98□□□□□ -1.93
DDX28Q9NUL7 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
DDX28Q9NUL7 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RNU6-223P-201ENST00000362830 107 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 SNORA26.7-201ENST00000391288 122 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RPL21P75-201ENST00000396599 483 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RPL21P28-201ENST00000401418 483 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL590084.2-201ENST00000401481 382 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL592114.1-201ENST00000403842 483 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 NDUFB4P4-201ENST00000404822 243 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL359704.1-201ENST00000411586 781 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC245054.2-201ENST00000415639 319 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 NDUFB4P7-201ENST00000423198 363 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC234781.2-201ENST00000426370 994 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms