Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MTND1P27-201ENST00000451117 902 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 RBM43P1-201ENST00000476891 1081 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 MTCO3P28-201ENST00000513351 515 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 RN7SKP60-201ENST00000516985 239 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC022695.1-201ENST00000522089 237 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC120057.2-201ENST00000571520 271 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 MIR3913-1-201ENST00000577744 102 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 MIR4284-201ENST00000578924 81 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 MIR4738-201ENST00000579134 87 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 RN7SL600P-201ENST00000581811 299 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 MIR3138-201ENST00000585238 82 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC093227.2-201ENST00000589357 285 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 DPPA3P3-201ENST00000603842 430 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AL137849.1-201ENST00000604767 169 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC098614.4-201ENST00000607601 462 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AL445567.2-201ENST00000618935 498 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 AC110994.2-201ENST00000635481 492 ntBASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.21□□□□□ -1.9
CHMP1AQ9HD42 FARSBP1-201ENST00000435808 1778 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 MTND5P27-201ENST00000428871 1720 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 RNA5SP295-201ENST00000362655 121 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 U3.11-201ENST00000364476 212 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 RNU4-24P-201ENST00000364565 139 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AL513331.1-201ENST00000411908 397 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 ISCA1P6-201ENST00000427740 390 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC119618.1-201ENST00000434191 222 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 CBWD4P-201ENST00000445695 655 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC006480.1-201ENST00000449887 378 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 MTCO2P29-201ENST00000465212 189 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC084198.1-201ENST00000477747 402 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 RNA5SP208-201ENST00000516156 78 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 RNU6-1220P-201ENST00000517126 108 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC128657.1-201ENST00000549459 145 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 MIR3167-201ENST00000579623 85 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 MIR3682-201ENST00000581338 84 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 MIR3939-201ENST00000582614 106 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 MIR3611-201ENST00000584484 83 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC008962.1-201ENST00000605729 304 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC006566.1-201ENST00000608943 513 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AC100793.4-201ENST00000613683 429 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 AF117829.1-206ENST00000621883 3802 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 CUL1P1-201ENST00000509510 2425 ntBASIC3.2□□□□□ -1.9
CHMP1AQ9HD42 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 Y_RNA.318-201ENST00000365131 97 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 MIR585-201ENST00000384887 94 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 MIR199A2-201ENST00000385289 110 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 RPS26P8-201ENST00000393490 348 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 RPS3AP36-201ENST00000398190 775 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL139397.2-201ENST00000404529 772 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 PPIAP31-201ENST00000405422 495 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 RPL21P65-201ENST00000406094 466 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 RN7SKP53-201ENST00000411337 315 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 TPT1P7-201ENST00000458300 517 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms