Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 MTND2P19-201ENST00000449129 1012 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP42Q9H9J4 IGJP1-201ENST00000522682 475 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC087272.1-201ENST00000523624 533 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC090695.1-201ENST00000561269 1222 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 LRRC37A5P-203ENST00000580181 585 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 SNORD39.3-201ENST00000584451 71 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 RMST_10.1-201ENST00000616309 154 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 AL163051.2-201ENST00000618976 735 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC104820.1-201ENST00000624183 307 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP42Q9H9J4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 MTND4P35-201ENST00000604257 1375 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC005336.3-201ENST00000623833 2679 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC090740.1-201ENST00000623193 2262 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
USP42Q9H9J4 RNU6-796P-201ENST00000391086 107 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 FO393413.1-201ENST00000402892 195 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC099677.1-201ENST00000420575 175 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AL929288.2-201ENST00000446368 407 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 OR6K5P-201ENST00000447050 945 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC110588.1-201ENST00000559699 137 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC245036.5-201ENST00000596330 847 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 GAS5-AS1-201ENST00000602767 694 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AL020997.3-201ENST00000602843 359 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AP001033.2-201ENST00000609701 1003 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 AC002064.3-201ENST00000623448 346 ntBASIC2.6□□□□□ -1.99
USP42Q9H9J4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP42Q9H9J4 RNA5SP139-201ENST00000364340 117 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 RNU6-1180P-201ENST00000364935 107 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.59□□□□□ -2
USP42Q9H9J4 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.59□□□□□ -2
USP42Q9H9J4 HMGN2P35-201ENST00000412164 270 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 AC009237.2-201ENST00000421358 284 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.59□□□□□ -2
USP42Q9H9J4 AC108667.1-201ENST00000428618 249 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 MTND4LP10-201ENST00000435146 291 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.59□□□□□ -2
USP42Q9H9J4 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.59□□□□□ -2
USP42Q9H9J4 VPS26AP1-201ENST00000483197 979 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.59□□□□□ -2
USP42Q9H9J4 AC006390.1-201ENST00000508068 283 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 RNU6-416P-201ENST00000516265 103 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 SNORA31.11-201ENST00000516528 139 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 AC125611.2-201ENST00000551907 647 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.59□□□□□ -2
USP42Q9H9J4 AC023824.3-201ENST00000569003 562 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 DUXAP3-201ENST00000603616 594 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 HSPE1P7-201ENST00000604681 321 ntBASIC2.59□□□□□ -2
USP42Q9H9J4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USP42Q9H9J4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.58□□□□□ -2
USP42Q9H9J4 Y_RNA.226-201ENST00000364337 114 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 RPS15AP38-201ENST00000413110 372 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.58□□□□□ -2
USP42Q9H9J4 AL009174.1-201ENST00000426577 416 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.58□□□□□ -2
USP42Q9H9J4 FABP5P13-201ENST00000452144 328 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 NDUFA5P7-201ENST00000452914 242 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 MTND3P4-201ENST00000453537 303 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 AL359385.1-201ENST00000456509 365 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 PABPC1P3-201ENST00000469174 459 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 FAM172BP-201ENST00000487497 1089 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 RPL21P131-201ENST00000497298 483 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 AC093767.1-201ENST00000504523 156 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 AC108729.3-201ENST00000513484 108 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 RNA5SP182-201ENST00000516064 82 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 AC087373.1-201ENST00000524920 491 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 HSPE1P20-201ENST00000538133 289 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.58□□□□□ -2
USP42Q9H9J4 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.58□□□□□ -2
USP42Q9H9J4 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.58□□□□□ -2
USP42Q9H9J4 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.58□□□□□ -2
USP42Q9H9J4 AC016911.1-201ENST00000613297 452 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 AL138880.2-201ENST00000616214 239 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.58□□□□□ -2
USP42Q9H9J4 MTCO1P6-201ENST00000481192 1384 ntBASIC2.58□□□□□ -2
USP42Q9H9J4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USP42Q9H9J4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USP42Q9H9J4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
USP42Q9H9J4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.57□□□□□ -2
USP42Q9H9J4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 RNU6-14P-201ENST00000384630 106 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms