Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AP005136.1-201ENST00000579765 429 ntBASIC3□□□□□ -1.93
CCDC28BQ9BUN5 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
CCDC28BQ9BUN5 AC083760.1-201ENST00000589621 670 ntBASIC3□□□□□ -1.93
CCDC28BQ9BUN5 AL022161.1-201ENST00000604390 213 ntBASIC3□□□□□ -1.93
CCDC28BQ9BUN5 AC055876.5-201ENST00000605667 259 ntBASIC3□□□□□ -1.93
CCDC28BQ9BUN5 AC073114.1-201ENST00000612027 490 ntBASIC3□□□□□ -1.93
CCDC28BQ9BUN5 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC28BQ9BUN5 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC28BQ9BUN5 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC244517.1-201ENST00000606030 2086 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 RNU6-263P-201ENST00000363811 107 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 Y_RNA.234-201ENST00000364409 97 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 RNU6-769P-201ENST00000384407 104 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 MIR218-2-201ENST00000385006 110 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 RN7SKP159-201ENST00000410657 292 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC245052.5-201ENST00000416320 649 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AL445584.1-201ENST00000431451 330 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC109583.1-201ENST00000432156 268 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 MTCYBP45-201ENST00000435243 565 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AP000542.1-201ENST00000448473 371 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC140076.1-201ENST00000449897 361 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 NUTF2P7-201ENST00000453086 375 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AP001025.2-201ENST00000490908 477 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC006390.1-201ENST00000508068 283 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 RNU6-1073P-201ENST00000517182 106 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 RNU6-711P-201ENST00000517255 106 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 OR5G4P-201ENST00000525251 760 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 OR4P1P-201ENST00000530808 1136 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC013828.2-201ENST00000532487 235 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC135279.1-201ENST00000543493 504 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 PRELID3BP8-201ENST00000604148 295 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AC004853.1-201ENST00000604902 698 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 AL158063.1-201ENST00000615349 536 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 CRYM-AS1-204ENST00000637983 556 ntBASIC2.99□□□□□ -1.93
CCDC28BQ9BUN5 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AL035425.3-201ENST00000564206 4996 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 PABPC1P9-201ENST00000426076 1612 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 Y_RNA.97-201ENST00000363094 102 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL21P75-201ENST00000396599 483 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL21P28-201ENST00000401418 483 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AL356421.1-201ENST00000403255 413 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AL592114.1-201ENST00000403842 483 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AL139095.1-201ENST00000404326 391 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 SNORA11B-201ENST00000408175 129 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 BX323014.1-201ENST00000412876 237 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL17P12-201ENST00000413391 526 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 CYCSP46-201ENST00000423569 204 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL36AP6-201ENST00000435770 321 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL21P39-201ENST00000463605 483 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 MTND4LP3-201ENST00000468320 276 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL21P93-201ENST00000480465 489 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC233702.1-201ENST00000482905 502 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC087190.1-201ENST00000484462 480 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC093591.1-201ENST00000491435 481 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL21P129-201ENST00000491732 478 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RPL21P16-201ENST00000495531 483 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC080014.1-201ENST00000496877 1201 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 HSPD1P15-201ENST00000505573 1122 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 MTND5P13-201ENST00000513046 1079 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 RNU6-714P-201ENST00000516963 103 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AP000857.1-201ENST00000532151 543 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 ZNF415P1-201ENST00000582279 1166 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 MIR4307-201ENST00000582802 84 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 MIR3670-2-201ENST00000582974 65 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 MIR3670-1-201ENST00000584160 65 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 MIR3670-3-201ENST00000584855 65 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AL358072.1-201ENST00000604156 575 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 BCRP9-201ENST00000605312 388 ntBASIC2.98□□□□□ -1.93
CCDC28BQ9BUN5 AL031775.1-201ENST00000607014 887 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms