Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 RNU2-25P-201ENST00000411041 191 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 RPL7P8-201ENST00000411964 730 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 TPMTP2-201ENST00000414372 726 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 BX682237.1-201ENST00000415016 335 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 ELOCP9-201ENST00000418624 239 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC099548.1-201ENST00000421443 426 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 BMI1P1-201ENST00000445879 941 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC079395.1-201ENST00000510981 262 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC010546.1-201ENST00000569391 485 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC006504.3-201ENST00000586818 523 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC105148.1-201ENST00000604961 409 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 RPL23AP88-201ENST00000605759 454 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 Z99129.2-201ENST00000619967 314 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AC022336.2-201ENST00000568966 2538 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 ZNF876P-202ENST00000398732 1485 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AL035425.3-201ENST00000564206 4996 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 RNU1-109P-201ENST00000383960 147 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 SNORA54-201ENST00000384281 123 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 Y_RNA.548-201ENST00000384656 105 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 SNORA26.7-201ENST00000391288 122 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AL451062.2-201ENST00000427515 271 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC008850.1-201ENST00000427546 362 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 ARPC3P5-201ENST00000448802 534 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 OR6K1P-201ENST00000456766 971 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 RPL27AP5-201ENST00000469428 449 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 RPL31P41-201ENST00000477967 372 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 RPS29P2-201ENST00000479278 136 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AP002748.2-201ENST00000528671 348 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC107016.2-201ENST00000547968 190 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AL512347.1-201ENST00000566420 503 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 RPL23AP84-201ENST00000571193 464 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC103810.1-201ENST00000579873 453 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC006270.3-201ENST00000605967 1036 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC107952.2-201ENST00000606048 486 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AL357080.1-201ENST00000617394 239 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 AC004777.1-201ENST00000624317 287 ntBASIC2.97□□□□□ -1.93
VPS39Q96JC1 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS39Q96JC1 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
VPS39Q96JC1 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.93
VPS39Q96JC1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS39Q96JC1 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS39Q96JC1 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS39Q96JC1 SNORA38.1-201ENST00000364172 131 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 RNU6-343P-201ENST00000364709 104 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 RNU6-83P-201ENST00000384568 112 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 TIMM9P2-201ENST00000419324 266 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 CR769776.1-201ENST00000441254 787 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS39Q96JC1 COX6CP2-201ENST00000444980 225 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 MTCYBP3-201ENST00000445588 1137 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 MTCO2P25-201ENST00000447065 681 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 MTND1P16-201ENST00000465177 898 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AC117440.1-201ENST00000474107 571 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AC104090.1-201ENST00000506341 1171 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 RN7SKP40-201ENST00000517211 242 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms