Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 VN1R34P-201ENST00000447387 883 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 SNORD121B-201ENST00000458838 81 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 MEMO1P3-201ENST00000459811 302 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 FAM133DP-201ENST00000464802 691 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AP000852.1-201ENST00000472460 573 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL358832.1-201ENST00000497800 389 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC008885.1-201ENST00000514930 301 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 RPPH1-2P-201ENST00000516688 293 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC026241.1-201ENST00000517873 2142 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC025881.1-201ENST00000518851 512 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 CCNG2P1-201ENST00000549521 1000 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 MTND4P33-201ENST00000556706 766 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL353997.4-201ENST00000586196 166 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC006539.2-201ENST00000601729 572 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 RPL12P50-201ENST00000603116 116 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 U73023.1-201ENST00000603134 700 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC015871.2-201ENST00000603605 948 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL031176.1-201ENST00000604554 466 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL158042.1-201ENST00000605338 460 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC007349.4-201ENST00000608114 532 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC006213.4-201ENST00000616184 634 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AC084757.4-201ENST00000616350 526 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL136981.2-201ENST00000617319 734 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 SNORD113-6-201ENST00000363345 75 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 RNA5SP393-201ENST00000363423 117 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 OR4K11P-201ENST00000431829 904 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 MTND1P32-201ENST00000433043 938 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 RSU1P2-202ENST00000437884 485 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 MTND4P6-201ENST00000438297 472 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 CR769776.1-201ENST00000441254 787 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 MTND3P1-201ENST00000441336 220 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 MTCO1P27-201ENST00000448269 226 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 PRSS3P4-201ENST00000453323 162 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 RPL7P18-201ENST00000478965 734 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 CASP1P1-201ENST00000526345 212 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AP005205.1-201ENST00000563503 508 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC010620.2-201ENST00000600135 313 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC112220.3-201ENST00000605502 502 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AL161734.1-201ENST00000609720 557 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC106028.5-201ENST00000610332 395 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC090132.2-201ENST00000615881 347 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC022960.3-201ENST00000619794 441 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 MIR6075-201ENST00000620782 95 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AL356473.1-201ENST00000406203 1408 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 AC012321.1-201ENST00000561622 1588 ntBASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
CCDC54Q8NEL0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 ZNF876P-202ENST00000398732 1485 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 RNU5E-8P-201ENST00000363502 116 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 MIR592-201ENST00000384959 97 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 MIR34B-201ENST00000385076 84 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AL512633.1-201ENST00000399931 655 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AL590004.2-201ENST00000404787 371 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 SNX10-203ENST00000409367 746 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 USP9YP33-201ENST00000412220 421 ntBASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC54Q8NEL0 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms