Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC104964.3-201ENST00000606115 2860 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 RNU6-834P-201ENST00000362367 110 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 MIR600-201ENST00000385007 98 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AL513475.1-201ENST00000406602 315 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 DPPA2P2-201ENST00000418220 897 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 EI24P4-201ENST00000423683 1078 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 TOMM20P4-201ENST00000427861 435 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 BX679664.1-201ENST00000434429 253 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AP006245.1-201ENST00000522549 120 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AP000859.1-201ENST00000525536 307 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 TGIF1P1-201ENST00000558095 802 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 MIR548X2-201ENST00000579776 100 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC068790.4-201ENST00000602474 263 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC240442.1-201ENST00000616055 283 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC039056.2-201ENST00000622261 511 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 AC091905.4-201ENST00000623432 202 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 BCORP1-203ENST00000513194 5093 ntBASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
NPAS3Q8IXF0 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 SNORA25.1-201ENST00000362326 128 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 U3.3-201ENST00000362986 216 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 Y_RNA.286-201ENST00000364813 102 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 RNU6-326P-201ENST00000365480 107 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 SNORA22-201ENST00000383907 134 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 RNU6-147P-201ENST00000383983 107 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 CYB5AP4-201ENST00000396692 399 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AL078599.1-201ENST00000402075 293 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC005094.1-201ENST00000440420 368 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 RN7SL188P-201ENST00000469842 285 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC097484.1-201ENST00000471148 389 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 SNORA25.12-201ENST00000516202 82 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 CYCSP26-201ENST00000534107 320 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 OR1M4P-201ENST00000589199 287 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC007566.2-201ENST00000603642 413 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC087385.3-201ENST00000620477 187 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 AC008785.1-201ENST00000624475 456 ntBASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
NPAS3Q8IXF0 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 RNU6-1289P-201ENST00000384431 106 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 RNU6-45P-201ENST00000384471 107 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 SNORD56.6-201ENST00000384569 71 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AL591034.2-201ENST00000402839 359 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AC024067.1-201ENST00000426199 223 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AL136126.1-201ENST00000473603 402 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 RN7SL432P-201ENST00000484057 298 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AP001025.1-201ENST00000486139 332 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 IGLV2-34-201ENST00000490007 283 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 RNU6-168P-201ENST00000516189 101 ntBASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.49□□□□□ -1.53
NPAS3Q8IXF0 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms