Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL109653.1-201ENST00000603091 248 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 AC012493.3-201ENST00000604494 112 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
USP54Q70EL1 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USP54Q70EL1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
USP54Q70EL1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
USP54Q70EL1 MTND4P31-201ENST00000425607 1343 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 Y_RNA.327-201ENST00000365201 102 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 RNU4-52P-201ENST00000384209 138 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
USP54Q70EL1 PAICSP7-201ENST00000419829 962 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.08□□□□□ -2.08
USP54Q70EL1 MTCYBP45-201ENST00000435243 565 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 SNRPEP4-201ENST00000435815 279 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.08□□□□□ -2.08
USP54Q70EL1 MTND3P6-201ENST00000485242 339 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 AC055855.1-201ENST00000489563 579 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 AL110115.1-201ENST00000614396 364 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
USP54Q70EL1 AP003122.6-201ENST00000623831 495 ntBASIC2.08□□□□□ -2.08
USP54Q70EL1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USP54Q70EL1 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
USP54Q70EL1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
USP54Q70EL1 PABPC1P9-201ENST00000426076 1612 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 DEFB109C-201ENST00000382575 264 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 DEFB109B-201ENST00000382656 264 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 ANAPC10P1-201ENST00000395991 556 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.07□□□□□ -2.08
USP54Q70EL1 Z77249.1-201ENST00000444622 1175 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.07□□□□□ -2.08
USP54Q70EL1 AL121594.1-201ENST00000475906 575 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.07□□□□□ -2.08
USP54Q70EL1 RPL21P131-201ENST00000497298 483 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 NUP58P1-201ENST00000502546 1738 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 MTCO3P44-201ENST00000510977 541 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.07□□□□□ -2.08
USP54Q70EL1 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
USP54Q70EL1 APOOP1-201ENST00000604695 592 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.07□□□□□ -2.08
USP54Q70EL1 MIR6895-201ENST00000613497 78 ntBASIC2.07□□□□□ -2.08
USP54Q70EL1 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.07□□□□□ -2.08
USP54Q70EL1 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.07□□□□□ -2.08
USP54Q70EL1 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
USP54Q70EL1 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2.07□□□□□ -2.08
USP54Q70EL1 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
USP54Q70EL1 AL136164.4-201ENST00000625013 2135 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 AC002546.1-201ENST00000588041 2504 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.06□□□□□ -2.08
USP54Q70EL1 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP54Q70EL1 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP54Q70EL1 RNU6-582P-201ENST00000362989 107 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 SNORA7.1-201ENST00000363750 139 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 RFESDP1-201ENST00000422350 461 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 OR51AB1P-201ENST00000429046 620 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 RPS7P2-201ENST00000435134 607 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 AL451074.3-201ENST00000437709 472 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.06□□□□□ -2.08
USP54Q70EL1 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.06□□□□□ -2.08
USP54Q70EL1 SNORD59.2-201ENST00000516873 68 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 RNU6-711P-201ENST00000517255 106 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.06□□□□□ -2.08
USP54Q70EL1 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.06□□□□□ -2.08
USP54Q70EL1 AL354943.1-201ENST00000572103 781 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 ZNF92P3-201ENST00000596594 954 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP54Q70EL1 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.06□□□□□ -2.08
USP54Q70EL1 MIR144-201ENST00000384886 86 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 RNU6-244P-201ENST00000391028 104 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 AL590084.1-201ENST00000407885 387 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 MIR1250-201ENST00000408098 113 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.06□□□□□ -2.08
USP54Q70EL1 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.06□□□□□ -2.08
USP54Q70EL1 AC015720.1-201ENST00000565251 277 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.06□□□□□ -2.08
USP54Q70EL1 FAM60CP-201ENST00000591086 664 ntBASIC2.06□□□□□ -2.08
USP54Q70EL1 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
USP54Q70EL1 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
USP54Q70EL1 AP002907.1-201ENST00000606361 1430 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 U8.1-201ENST00000362843 134 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 Y_RNA.112-201ENST00000363250 102 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 MIR517C-201ENST00000385103 95 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 RNU2-21P-201ENST00000410368 188 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.05□□□□□ -2.08
USP54Q70EL1 AC023512.1-201ENST00000444513 499 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.05□□□□□ -2.08
USP54Q70EL1 HMGB1P38-201ENST00000490557 577 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.05□□□□□ -2.08
USP54Q70EL1 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.05□□□□□ -2.08
USP54Q70EL1 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.05□□□□□ -2.08
USP54Q70EL1 RNU6-1004P-201ENST00000516584 111 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 MTND2P26-201ENST00000528255 1029 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 AP000790.1-201ENST00000528891 737 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 MTCYBP41-201ENST00000528913 1123 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 POLR2KP1-201ENST00000553226 168 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 MIR3660-201ENST00000584845 100 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 AP005212.4-201ENST00000614206 710 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 U73479.1-201ENST00000618062 168 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.05□□□□□ -2.08
USP54Q70EL1 BX649567.1-201ENST00000642071 1134 ntBASIC2.05□□□□□ -2.08
USP54Q70EL1 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms