Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL353748.2-201ENST00000622148 471 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC093591.3-201ENST00000634516 308 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC087821.2-201ENST00000637086 450 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA1P55317 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.11□□□□□ -2.07
FOXA1P55317 SGO1P2-201ENST00000429458 1589 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.1□□□□□ -2.07
FOXA1P55317 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA1P55317 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA1P55317 RNU6-707P-201ENST00000364647 95 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 SUGT1P1-201ENST00000379514 476 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA1P55317 RNU6-1300P-201ENST00000391046 108 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA1P55317 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.1□□□□□ -2.07
FOXA1P55317 USP9YP27-201ENST00000418455 438 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 RPL21P32-201ENST00000419877 477 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 UBE2D3P2-201ENST00000424409 445 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 MTND4LP10-201ENST00000435146 291 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 RPL32P28-201ENST00000443577 397 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AL118520.1-201ENST00000450770 291 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.1□□□□□ -2.07
FOXA1P55317 snoU109.4-201ENST00000458953 143 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC073901.1-201ENST00000462471 408 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC015908.1-201ENST00000478739 476 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 RPL23AP49-201ENST00000492925 468 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA1P55317 AC006390.1-201ENST00000508068 283 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA1P55317 AC008837.1-201ENST00000511513 412 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA1P55317 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.1□□□□□ -2.07
FOXA1P55317 AC017037.2-201ENST00000513850 890 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC112198.4-201ENST00000515450 351 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 MTCO3P15-201ENST00000526563 574 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC018630.1-201ENST00000541376 925 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA1P55317 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA1P55317 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.1□□□□□ -2.07
FOXA1P55317 AC009220.3-201ENST00000604318 586 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC106791.2-201ENST00000604680 391 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AL592148.2-201ENST00000612210 372 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC034102.8-201ENST00000615146 484 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 AC140725.3-201ENST00000616193 880 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA1P55317 MFSD8-245ENST00000641743 948 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
FOXA1P55317 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA1P55317 MTND5P6-201ENST00000422338 1798 ntBASIC2.1□□□□□ -2.07
FOXA1P55317 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA1P55317 AC099654.7-201ENST00000635788 2127 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
FOXA1P55317 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
FOXA1P55317 RNU6-236P-201ENST00000363886 106 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA1P55317 SNORD51-201ENST00000384320 80 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AL035405.1-201ENST00000400795 710 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 CYCSP45-201ENST00000402289 315 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AL356057.2-201ENST00000403318 432 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 RNU2-15P-201ENST00000410692 191 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 RPS7P9-201ENST00000414704 586 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 LUZP4P1-201ENST00000415420 344 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AC005005.2-201ENST00000420779 380 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC2.09□□□□□ -2.07
FOXA1P55317 C1DP1-201ENST00000426049 402 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 MTATP6P4-201ENST00000427725 675 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC2.09□□□□□ -2.07
FOXA1P55317 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA1P55317 AP000949.1-201ENST00000438328 629 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 MTCYBP34-201ENST00000439552 670 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AL031659.1-201ENST00000447075 539 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 FTH1P25-201ENST00000447665 469 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 RPL23AP7-203ENST00000449021 469 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
FOXA1P55317 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.09□□□□□ -2.07
FOXA1P55317 AC010486.1-201ENST00000511793 424 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.09□□□□□ -2.07
FOXA1P55317 SNORA31.8-201ENST00000516327 108 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AP001646.1-201ENST00000527936 915 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
FOXA1P55317 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.09□□□□□ -2.07
FOXA1P55317 AC087897.1-201ENST00000550134 156 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.09□□□□□ -2.07
FOXA1P55317 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.09□□□□□ -2.07
FOXA1P55317 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC2.09□□□□□ -2.07
FOXA1P55317 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.09□□□□□ -2.07
FOXA1P55317 FAM60BP-201ENST00000578364 658 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA1P55317 AL445435.1-201ENST00000604232 665 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AC010738.1-201ENST00000604970 987 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AP001521.1-201ENST00000609150 300 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AL512427.1-201ENST00000618593 349 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AL157770.1-201ENST00000623049 439 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 AP000553.5-201ENST00000641933 54 ntBASIC2.09□□□□□ -2.07
FOXA1P55317 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.09□□□□□ -2.08
FOXA1P55317 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
FOXA1P55317 Z82209.1-201ENST00000422141 2135 ntBASIC2.09□□□□□ -2.08
FOXA1P55317 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
FOXA1P55317 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms