Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.91□□□□□ -1.78
CTCFP49711 AC002075.2-201ENST00000425207 252 ntBASIC3.91□□□□□ -1.78
CTCFP49711 ISCA1P6-201ENST00000427740 390 ntBASIC3.91□□□□□ -1.78
CTCFP49711 ISCA1P2-201ENST00000438679 421 ntBASIC3.91□□□□□ -1.78
CTCFP49711 Z83846.1-201ENST00000446798 265 ntBASIC3.91□□□□□ -1.78
CTCFP49711 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 AC023598.1-201ENST00000472521 361 ntBASIC3.91□□□□□ -1.78
CTCFP49711 ST13P14-201ENST00000474095 734 ntBASIC3.91□□□□□ -1.78
CTCFP49711 AC106872.3-201ENST00000495104 446 ntBASIC3.91□□□□□ -1.78
CTCFP49711 AC022447.3-201ENST00000506865 495 ntBASIC3.91□□□□□ -1.78
CTCFP49711 HMGB3P15-201ENST00000507326 574 ntBASIC3.91□□□□□ -1.78
CTCFP49711 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.91□□□□□ -1.78
CTCFP49711 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.91□□□□□ -1.78
CTCFP49711 RN7SKP209-201ENST00000516888 304 ntBASIC3.91□□□□□ -1.78
CTCFP49711 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CTCFP49711 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CTCFP49711 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.91□□□□□ -1.78
CTCFP49711 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.91□□□□□ -1.78
CTCFP49711 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 BNIP3P23-201ENST00000599655 511 ntBASIC3.91□□□□□ -1.78
CTCFP49711 AL162713.1-201ENST00000604480 262 ntBASIC3.91□□□□□ -1.78
CTCFP49711 RMST_8.1-201ENST00000610287 165 ntBASIC3.91□□□□□ -1.78
CTCFP49711 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.91□□□□□ -1.78
CTCFP49711 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.91□□□□□ -1.78
CTCFP49711 AC127502.3-201ENST00000636170 1206 ntBASIC3.91□□□□□ -1.78
CTCFP49711 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CTCFP49711 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CTCFP49711 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CTCFP49711 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CTCFP49711 Y_RNA.97-201ENST00000363094 102 ntBASIC3.9□□□□□ -1.79
CTCFP49711 RNU6-359P-201ENST00000365466 108 ntBASIC3.9□□□□□ -1.79
CTCFP49711 RNU6-1207P-201ENST00000384343 107 ntBASIC3.9□□□□□ -1.79
CTCFP49711 RNU6-769P-201ENST00000384407 104 ntBASIC3.9□□□□□ -1.79
CTCFP49711 RN7SKP285-201ENST00000410137 318 ntBASIC3.9□□□□□ -1.79
CTCFP49711 MTCO1P17-201ENST00000411522 491 ntBASIC3.9□□□□□ -1.79
CTCFP49711 Z99497.1-201ENST00000421282 135 ntBASIC3.9□□□□□ -1.79
CTCFP49711 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.9□□□□□ -1.79
CTCFP49711 SKP1P1-201ENST00000438081 489 ntBASIC3.9□□□□□ -1.79
CTCFP49711 UBE2D3P4-201ENST00000441973 436 ntBASIC3.9□□□□□ -1.79
CTCFP49711 RPS27AP8-201ENST00000452665 445 ntBASIC3.9□□□□□ -1.79
CTCFP49711 RN7SL863P-201ENST00000462370 296 ntBASIC3.9□□□□□ -1.79
CTCFP49711 AC010285.1-201ENST00000470580 392 ntBASIC3.9□□□□□ -1.79
CTCFP49711 AC109486.1-201ENST00000486833 374 ntBASIC3.9□□□□□ -1.79
CTCFP49711 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.9□□□□□ -1.79
CTCFP49711 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.9□□□□□ -1.79
CTCFP49711 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.9□□□□□ -1.79
CTCFP49711 AC106038.2-201ENST00000520706 568 ntBASIC3.9□□□□□ -1.79
CTCFP49711 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.9□□□□□ -1.79
CTCFP49711 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.9□□□□□ -1.79
CTCFP49711 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.9□□□□□ -1.79
CTCFP49711 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.9□□□□□ -1.79
CTCFP49711 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.9□□□□□ -1.79
CTCFP49711 MIR4319-201ENST00000577285 85 ntBASIC3.9□□□□□ -1.79
CTCFP49711 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CTCFP49711 AC013444.2-201ENST00000603317 787 ntBASIC3.9□□□□□ -1.79
CTCFP49711 AL353748.2-201ENST00000622148 471 ntBASIC3.9□□□□□ -1.79
CTCFP49711 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.9□□□□□ -1.79
CTCFP49711 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.9□□□□□ -1.79
CTCFP49711 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
CTCFP49711 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CTCFP49711 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.9□□□□□ -1.79
CTCFP49711 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CTCFP49711 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CTCFP49711 AF117829.1-206ENST00000621883 3802 ntBASIC3.89□□□□□ -1.79
CTCFP49711 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CTCFP49711 RNU6-1155P-201ENST00000363554 107 ntBASIC3.89□□□□□ -1.79
CTCFP49711 SNORD116-2-201ENST00000384274 95 ntBASIC3.89□□□□□ -1.79
CTCFP49711 SNORD116-6-201ENST00000384711 96 ntBASIC3.89□□□□□ -1.79
CTCFP49711 MIR591-201ENST00000385290 95 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AL356421.1-201ENST00000403255 413 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AP000567.1-201ENST00000406413 156 ntBASIC3.89□□□□□ -1.79
CTCFP49711 RNU4-65P-201ENST00000410473 140 ntBASIC3.89□□□□□ -1.79
CTCFP49711 HMGB3P20-201ENST00000417997 600 ntBASIC3.89□□□□□ -1.79
CTCFP49711 BX119904.4-201ENST00000424402 301 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.89□□□□□ -1.79
CTCFP49711 AC099563.1-201ENST00000456086 418 ntBASIC3.89□□□□□ -1.79
CTCFP49711 OR6K1P-201ENST00000456766 971 ntBASIC3.89□□□□□ -1.79
CTCFP49711 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.89□□□□□ -1.79
CTCFP49711 AP001025.2-201ENST00000490908 477 ntBASIC3.89□□□□□ -1.79
CTCFP49711 APOOP4-201ENST00000513530 597 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AC114781.4-201ENST00000513707 639 ntBASIC3.89□□□□□ -1.79
CTCFP49711 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.89□□□□□ -1.79
CTCFP49711 AP003497.1-201ENST00000528472 562 ntBASIC3.89□□□□□ -1.79
CTCFP49711 CR383656.7-201ENST00000548164 174 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.89□□□□□ -1.79
CTCFP49711 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.89□□□□□ -1.79
CTCFP49711 SNORD84-203ENST00000584275 78 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AP000403.1-201ENST00000603349 851 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AC099778.2-201ENST00000610904 211 ntBASIC3.89□□□□□ -1.79
CTCFP49711 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.89□□□□□ -1.79
CTCFP49711 CRYM-AS1-204ENST00000637983 556 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AC006378.2-201ENST00000623178 2476 ntBASIC3.89□□□□□ -1.79
CTCFP49711 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
CTCFP49711 AL136164.4-201ENST00000625013 2135 ntBASIC3.89□□□□□ -1.79
CTCFP49711 AC091152.2-201ENST00000591628 2569 ntBASIC3.89□□□□□ -1.79
CTCFP49711 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms