Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL031183.1-201ENST00000457667 207 ntBASIC1.46□□□□□ -2.18
HMGA1P17096 AC023790.1-201ENST00000482174 347 ntBASIC1.46□□□□□ -2.18
HMGA1P17096 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
HMGA1P17096 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC1.46□□□□□ -2.18
HMGA1P17096 AC025768.1-201ENST00000510057 267 ntBASIC1.46□□□□□ -2.18
HMGA1P17096 Y_RNA.675-201ENST00000516389 149 ntBASIC1.46□□□□□ -2.18
HMGA1P17096 RNA5SP468-201ENST00000516782 93 ntBASIC1.46□□□□□ -2.18
HMGA1P17096 AL138976.2-201ENST00000563989 694 ntBASIC1.46□□□□□ -2.18
HMGA1P17096 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.46□□□□□ -2.18
HMGA1P17096 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.46□□□□□ -2.18
HMGA1P17096 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.46□□□□□ -2.18
HMGA1P17096 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.46□□□□□ -2.18
HMGA1P17096 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC1.46□□□□□ -2.18
HMGA1P17096 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
HMGA1P17096 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.46□□□□□ -2.18
HMGA1P17096 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
HMGA1P17096 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
HMGA1P17096 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.45□□□□□ -2.18
HMGA1P17096 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
HMGA1P17096 AL355497.1-201ENST00000406262 551 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 RNU2-68P-201ENST00000410878 191 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 AP000275.1-201ENST00000411943 390 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGA1P17096 NAP1L4P3-201ENST00000432820 1147 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 SNRPGP13-201ENST00000442212 177 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.45□□□□□ -2.18
HMGA1P17096 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGA1P17096 AC113155.1-201ENST00000511141 769 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 NDUFS5P6-201ENST00000529136 295 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGA1P17096 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGA1P17096 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.45□□□□□ -2.18
HMGA1P17096 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGA1P17096 AP001542.2-201ENST00000593141 364 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 RPS15AP11-201ENST00000594193 385 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 AC113194.1-201ENST00000606037 500 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 AC116618.1-201ENST00000634617 774 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 WWP1P1-201ENST00000466609 2769 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 AP001350.1-201ENST00000601906 1524 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 CENPCP1-201ENST00000533085 2578 ntBASIC1.45□□□□□ -2.18
HMGA1P17096 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
HMGA1P17096 RNU6-335P-201ENST00000364563 113 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 AL138880.1-201ENST00000405824 642 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 RNU4-72P-201ENST00000410754 173 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 RNA5SP247-201ENST00000411181 105 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.44□□□□□ -2.18
HMGA1P17096 VN1R31P-201ENST00000417498 730 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 ISCA1P6-201ENST00000427740 390 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 RABEPKP1-201ENST00000440529 1026 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 AC009296.1-201ENST00000443146 155 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.44□□□□□ -2.18
HMGA1P17096 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.44□□□□□ -2.18
HMGA1P17096 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.44□□□□□ -2.18
HMGA1P17096 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.44□□□□□ -2.18
HMGA1P17096 SNRPFP4-201ENST00000456366 242 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 RPS27P21-201ENST00000486977 252 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC1.44□□□□□ -2.18
HMGA1P17096 KLRA1P-201ENST00000503499 986 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 ARL2BPP2-201ENST00000550907 489 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 AC023813.2-201ENST00000564321 469 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 AC009127.3-201ENST00000570531 403 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.44□□□□□ -2.18
HMGA1P17096 AC009570.1-201ENST00000609599 745 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 uc_338.12-201ENST00000616344 181 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 U73479.1-201ENST00000618062 168 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 AL353770.2-201ENST00000620024 78 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 AL589994.2-201ENST00000621124 579 ntBASIC1.44□□□□□ -2.18
HMGA1P17096 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.44□□□□□ -2.18
HMGA1P17096 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC1.44□□□□□ -2.18
HMGA1P17096 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
HMGA1P17096 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.43□□□□□ -2.18
HMGA1P17096 MIR337-201ENST00000362281 93 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 RNU6-1072P-201ENST00000384703 107 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 RNU6-443P-201ENST00000384780 107 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
HMGA1P17096 AC244098.2-201ENST00000422068 99 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC1.43□□□□□ -2.18
HMGA1P17096 AC090774.1-201ENST00000435925 246 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 UBE2FP3-201ENST00000436366 524 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 AL139109.1-201ENST00000455491 297 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 AC092798.1-201ENST00000458542 409 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 MTCYBP18-201ENST00000501056 747 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.43□□□□□ -2.18
HMGA1P17096 RNU6-943P-201ENST00000516960 98 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 HMGB1P46-201ENST00000520062 610 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
HMGA1P17096 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
HMGA1P17096 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
HMGA1P17096 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC1.43□□□□□ -2.18
HMGA1P17096 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.43□□□□□ -2.18
HMGA1P17096 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.43□□□□□ -2.18
HMGA1P17096 NUTF2P8-201ENST00000604593 363 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 AC245884.12-201ENST00000615364 59 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 MIR8070-201ENST00000616510 88 ntBASIC1.43□□□□□ -2.18
HMGA1P17096 AC130650.2-201ENST00000618736 2403 ntBASIC1.42□□□□□ -2.18
HMGA1P17096 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
HMGA1P17096 CUL4AP1-201ENST00000514750 1863 ntBASIC1.42□□□□□ -2.18
HMGA1P17096 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
HMGA1P17096 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms