Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC012435.1-202ENST00000568772 240 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC006130.2-201ENST00000586202 326 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 U73023.1-201ENST00000603134 700 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL109618.2-201ENST00000605527 211 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL355472.4-201ENST00000610233 626 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL356266.1-201ENST00000623311 483 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AP003355.3-201ENST00000623465 114 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC110801.1-201ENST00000623590 212 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC008993.2-201ENST00000631744 806 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 ZNF833P-201ENST00000424938 1494 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 MFSD8-233ENST00000641482 4860 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC010680.1-201ENST00000590024 3590 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AP003122.5-201ENST00000527668 3766 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 SNORA62.3-201ENST00000365110 153 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 ESD-201ENST00000378697 1079 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 RNU6-217P-201ENST00000384164 104 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 RNU6-140P-201ENST00000384566 108 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 RNA5SP354-201ENST00000391247 136 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC078974.1-201ENST00000411597 223 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 ATP5A1P2-201ENST00000412323 255 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 USP9YP26-201ENST00000421008 661 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL512649.1-201ENST00000428997 581 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 RPL22P17-201ENST00000438729 315 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL357552.1-201ENST00000445254 415 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC020550.1-201ENST00000447385 163 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 NDUFAF4P3-201ENST00000456468 525 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL672167.3-201ENST00000465951 960 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 FTH1P2-201ENST00000466086 412 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AP000563.1-201ENST00000490865 758 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 RANP9-201ENST00000519957 271 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 MTND4LP18-201ENST00000526864 291 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL136363.1-201ENST00000605349 337 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC107294.3-201ENST00000609211 526 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC009159.2-201ENST00000617603 606 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC068880.5-201ENST00000624331 290 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AL136313.1-201ENST00000624804 202 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC092192.1-201ENST00000633154 1018 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC110079.1-202ENST00000635213 138 ntBASIC2.86□□□□□ -1.95
FOXA2Q9Y261 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA2Q9Y261 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 Y_RNA.46-201ENST00000362695 102 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 Y_RNA.97-201ENST00000363094 102 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 RNU1-105P-201ENST00000363470 161 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 RNU6-501P-201ENST00000364072 100 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 RNU6-809P-201ENST00000384461 107 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 ATG3P1-201ENST00000419507 911 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AL645937.1-202ENST00000421799 937 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC109583.1-201ENST00000432156 268 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC122718.1-201ENST00000439448 744 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 SUN3-208ENST00000453192 801 ntTSL 5 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 FAM133DP-201ENST00000464802 691 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 RN7SL542P-201ENST00000467147 294 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AP002884.2-201ENST00000471647 395 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 SNORA70.19-201ENST00000516717 90 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 RNA5SP290-201ENST00000517133 127 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC100870.1-201ENST00000522035 505 ntBASIC2.85□□□□□ -1.95
FOXA2Q9Y261 AC007991.1-201ENST00000522680 631 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 351.3 ms