Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 CLIC4P2-201ENST00000601934 717 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AC012669.1-201ENST00000603209 283 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AC025811.1-201ENST00000604312 472 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AC004853.1-201ENST00000604902 698 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL360219.1-201ENST00000610230 366 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL590099.1-201ENST00000615276 138 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL445264.1-201ENST00000621719 171 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AF246928.1-201ENST00000623768 87 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 SNORA51.2-201ENST00000364595 132 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 RNU5A-2P-201ENST00000384337 116 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 MTCO1P17-201ENST00000411522 491 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC107081.1-201ENST00000414975 361 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL138799.3-201ENST00000438968 350 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 CEACAMP4-201ENST00000457676 421 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC021205.2-201ENST00000480069 347 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC106872.3-201ENST00000495104 446 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 TXNP6-201ENST00000510190 310 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 LTV1P1-201ENST00000510683 1237 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC007834.2-201ENST00000536310 343 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 OR7K1P-201ENST00000546439 926 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL512310.1-201ENST00000548639 172 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 TGIF1P1-201ENST00000558095 802 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC006270.2-201ENST00000578523 652 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC011451.2-201ENST00000604303 598 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL596245.1-201ENST00000618994 362 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC008443.7-201ENST00000622195 246 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AL356585.4-201ENST00000623078 1229 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 AC091903.1-201ENST00000624322 454 ntBASIC3.61□□□□□ -1.83
ZNF541Q9H0D2 MTCO1P9-201ENST00000505577 1534 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AP001350.1-201ENST00000601906 1524 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 RNU6-777P-201ENST00000364265 104 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 SNORA7.2-201ENST00000364446 145 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 RNU6-744P-201ENST00000365557 107 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AP002088.1-201ENST00000382740 395 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 RNU6-1316P-201ENST00000384242 108 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 RNU6-1207P-201ENST00000384343 107 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 MIR887-201ENST00000401258 79 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 RPL7P8-201ENST00000411964 730 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AL365203.2-201ENST00000423444 196 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 UBE2FP3-201ENST00000436366 524 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 UBE2D3P1-201ENST00000436669 444 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 Z99127.3-201ENST00000448158 395 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 FDX1P2-201ENST00000450769 375 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AL353691.1-201ENST00000451332 387 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC078918.1-201ENST00000498515 228 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC114967.1-201ENST00000504890 259 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 POU5F1P7-201ENST00000508759 541 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC093809.1-201ENST00000509155 340 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC021146.1-201ENST00000511202 716 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 MTCO1P47-201ENST00000523889 1271 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 SETP7-201ENST00000552169 453 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AL109653.1-201ENST00000603091 248 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC018714.1-201ENST00000605028 208 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC097468.3-201ENST00000607956 456 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC103710.3-201ENST00000608157 948 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AC107214.2-201ENST00000608204 634 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 MTND4P16-201ENST00000466108 1367 ntBASIC3.6□□□□□ -1.83
ZNF541Q9H0D2 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.59□□□□□ -1.83
ZNF541Q9H0D2 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms