Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 USP8P1-201ENST00000494673 3183 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 NXPH1-205ENST00000602349 1953 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 MAPK10-372ENST00000641954 3413 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 OTUD4P1-201ENST00000237841 3067 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 RNU6-254P-201ENST00000363377 107 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 MIR129-1-201ENST00000384972 72 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 RNU6-907P-201ENST00000390924 102 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AL590762.2-201ENST00000395798 571 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AL136372.1-201ENST00000403060 228 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 RN7SKP140-201ENST00000411196 284 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 MTND3P8-201ENST00000412909 339 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 PPP1R11P2-201ENST00000423543 382 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 RPL21P66-201ENST00000426566 466 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC137499.1-201ENST00000427602 88 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AL136380.1-201ENST00000447970 162 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AL162389.1-201ENST00000449233 177 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 RPL36AP13-201ENST00000457490 317 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 SNORD19B-201ENST00000459623 84 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC108751.2-201ENST00000469993 231 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 RPS15AP36-201ENST00000492022 382 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 VN1R104P-201ENST00000505115 1009 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 SNRPGP16-201ENST00000533275 226 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC087241.2-201ENST00000535801 324 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC093012.1-202ENST00000549403 582 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AL355836.1-201ENST00000555951 870 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 SNRPGP17-201ENST00000603780 214 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 TUG1_2.1-201ENST00000614234 87 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AL731566.2-201ENST00000618971 317 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC068831.8-201ENST00000620171 435 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AP005019.3-201ENST00000620418 560 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 MIR6758-201ENST00000620653 63 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 AC009812.4-201ENST00000569134 1805 ntBASIC4.42□□□□□ -1.7
CLIP3Q96DZ5 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 RNU6-600P-201ENST00000362524 99 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 RNU6-1120P-201ENST00000362988 108 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 Y_RNA.128-201ENST00000363391 112 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 RNU6-456P-201ENST00000384493 107 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 SNORD96B-201ENST00000386148 79 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 RPL7P60-201ENST00000397636 735 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 TXNP7-201ENST00000406296 293 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 UBE2FP1-201ENST00000416536 447 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 MTATP6P4-201ENST00000427725 675 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 SRIP2-201ENST00000428470 166 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 IPO7P1-201ENST00000442031 636 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 CYCSP34-201ENST00000458172 304 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 Y_RNA.639-201ENST00000458981 102 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 RN7SL385P-201ENST00000468873 276 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 RPL36AP41-201ENST00000493820 306 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 RPL23AP55-201ENST00000498163 452 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AC020593.1-201ENST00000507399 299 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AC093840.1-201ENST00000511599 336 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 PSMA2P1-201ENST00000526365 646 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AC010525.2-201ENST00000590920 195 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms