Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 Z83843.1-201ENST00000604070 3685 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RNA5SP124-201ENST00000362739 110 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RNU5E-8P-201ENST00000363502 116 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RNA5SP479-201ENST00000364858 117 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 SNORA36C-201ENST00000384289 132 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RNU6-769P-201ENST00000384407 104 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 MIR554-201ENST00000384874 96 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 ATP5F1P3-201ENST00000397213 657 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL590084.2-201ENST00000401481 382 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RNA5SP229-201ENST00000410809 99 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 HMGN2P35-201ENST00000412164 270 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RAB9AP3-201ENST00000412737 573 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC107081.1-201ENST00000414975 361 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC010099.3-201ENST00000423896 409 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 BX119904.4-201ENST00000424402 301 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL445669.1-201ENST00000426743 755 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 UBE2V1P13-201ENST00000436983 439 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RAB9AP1-201ENST00000449393 573 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL359385.1-201ENST00000456509 365 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RPS27AP9-201ENST00000477681 438 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 CBX3P3-201ENST00000508108 532 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 LTV1P1-201ENST00000510683 1237 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL359273.1-201ENST00000510918 627 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC026801.2-201ENST00000515352 425 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RNU6-826P-201ENST00000516827 104 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 Y_RNA.717-201ENST00000517106 92 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 ERHP1-201ENST00000523006 310 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AL162713.1-201ENST00000604480 262 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC106900.2-201ENST00000604994 317 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AP000254.1-201ENST00000609934 520 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 Z99129.2-201ENST00000619967 314 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 FAM35BP-202ENST00000497389 3337 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC005832.2-201ENST00000538921 1430 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC008568.2-201ENST00000623862 2313 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC011460.1-201ENST00000636268 1834 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 AC233263.6-201ENST00000631132 1963 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 CUL1P1-201ENST00000509510 2425 ntBASIC2.47□□□□□ -2.01
RPUSD4Q96CM3 MTND5P33-201ENST00000571250 1450 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 RNU6-500P-201ENST00000362349 107 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 Y_RNA.18-201ENST00000362461 102 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 RNY4P24-201ENST00000362735 96 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 RNU1-64P-201ENST00000365443 163 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 RNU6-637P-201ENST00000384050 107 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 RPS29P4-201ENST00000414733 161 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 SYF2P2-201ENST00000417620 583 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AL512649.1-201ENST00000428997 581 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 NDUFB4P6-201ENST00000436819 366 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 LSM1P1-201ENST00000438629 273 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AL117351.1-201ENST00000438864 766 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 ATP5C1P1-201ENST00000441945 895 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AL591503.2-201ENST00000442314 1005 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 RPS12P18-201ENST00000442381 270 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 UBBP3-201ENST00000445497 241 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 Z96811.1-201ENST00000445880 108 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AC104978.1-201ENST00000449387 391 ntBASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.46□□□□□ -2.02
RPUSD4Q96CM3 HSPE1P6-201ENST00000479457 291 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms