Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 Y_RNA.122-201ENST00000363331 96 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 SSXP1-201ENST00000453640 473 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC107393.1-201ENST00000512403 346 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 SETP2-201ENST00000553886 926 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 BNIP3P7-201ENST00000605641 516 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 RNU6-53P-201ENST00000365367 106 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 RNU1-109P-201ENST00000383960 147 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC004965.1-201ENST00000413033 213 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 RPS15AP7-201ENST00000439294 405 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC096992.1-201ENST00000459808 709 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 RNU6-760P-201ENST00000516078 97 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 SNORD59.2-201ENST00000516873 68 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AP003717.3-201ENST00000544832 1180 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC113194.1-201ENST00000606037 500 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AC104307.1-201ENST00000616142 196 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 U73479.1-201ENST00000618062 168 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 AL136164.4-201ENST00000625013 2135 ntBASIC2.22□□□□□ -2.05
CCDC88AQ3V6T2 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 AC004022.2-201ENST00000413824 193 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 AL512504.1-201ENST00000415494 778 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 RPS6P14-201ENST00000425165 719 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 FO393419.3-201ENST00000428741 282 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 RAD1P2-201ENST00000446414 663 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 RPS24P6-201ENST00000452670 400 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 RNA5SP82-201ENST00000516707 92 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 AC107954.1-201ENST00000565906 727 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 AC006963.1-201ENST00000624003 1052 ntBASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC88AQ3V6T2 RNU6-799P-201ENST00000363567 107 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 RPL7P29-201ENST00000437151 728 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 FABP5P3-201ENST00000437960 408 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AL137159.1-201ENST00000452808 512 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AC010625.1-201ENST00000511296 403 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 RNU1-57P-201ENST00000384491 166 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 RPS15AP12-201ENST00000419498 388 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 HMGB1P38-201ENST00000490557 577 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 RPL21P131-201ENST00000497298 483 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 MTCYBP17-201ENST00000503579 789 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AC091057.2-201ENST00000602594 792 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 AC024560.3-201ENST00000608482 349 ntBASIC2.2□□□□□ -2.06
CCDC88AQ3V6T2 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RNA5SP391-201ENST00000363456 119 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RPL21P75-201ENST00000396599 483 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RPL21P28-201ENST00000401418 483 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 AL592114.1-201ENST00000403842 483 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RNU2-20P-201ENST00000410425 191 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 NUP35P2-201ENST00000416748 943 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 PSMA2P3-201ENST00000429685 675 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 PIGFP3-201ENST00000441918 722 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 AC011979.1-201ENST00000472300 483 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 HMGN2P13-201ENST00000476476 274 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RBM43P1-201ENST00000476891 1081 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RPL21P93-201ENST00000480465 489 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 AC233702.1-201ENST00000482905 502 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 AC093591.1-201ENST00000491435 481 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RPL21P16-201ENST00000495531 483 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 MIR5089-201ENST00000580047 84 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 AL355812.1-201ENST00000603215 216 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 YWHAQP7-201ENST00000603536 658 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 MIR502-201ENST00000606349 86 ntBASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC88AQ3V6T2 RNU6-335P-201ENST00000364563 113 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 RNY1P14-201ENST00000384426 108 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms