Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL445685.2-201ENST00000422551 342 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 UBE2FP3-201ENST00000436366 524 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CHD3Q12873 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC1.74□□□□□ -2.13
CHD3Q12873 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 RNU6-1073P-201ENST00000517182 106 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.74□□□□□ -2.13
CHD3Q12873 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.74□□□□□ -2.13
CHD3Q12873 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 COX6CP3-201ENST00000580869 223 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 OR1S1-201ENST00000624470 978 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CHD3Q12873 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
CHD3Q12873 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CHD3Q12873 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 MTND4P31-201ENST00000425607 1343 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 RNU6-457P-201ENST00000363999 107 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 RNU4-62P-201ENST00000410125 130 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 AC008173.1-201ENST00000418901 264 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AC005005.2-201ENST00000420779 380 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 CYCSP49-201ENST00000420810 319 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 RPL23AP16-201ENST00000441715 421 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC1.74□□□□□ -2.13
CHD3Q12873 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CHD3Q12873 RNF138P1-201ENST00000502765 546 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AC008427.1-201ENST00000503102 655 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 AC126177.3-201ENST00000551839 688 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.74□□□□□ -2.13
CHD3Q12873 AC068790.3-201ENST00000602988 553 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 RPP40P2-201ENST00000603596 712 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.6-201ENST00000603753 252 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.11-201ENST00000604059 253 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.10-201ENST00000604330 253 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AC008162.1-201ENST00000604718 254 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.1-201ENST00000604752 252 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.2-201ENST00000604983 252 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.5-201ENST00000605253 252 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.4-201ENST00000605279 254 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.12-201ENST00000605291 253 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.8-201ENST00000605353 252 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.9-201ENST00000605428 253 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL670379.7-201ENST00000605823 252 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.74□□□□□ -2.13
CHD3Q12873 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD3Q12873 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL049737.1-201ENST00000413920 1403 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 KPNA2P1-201ENST00000458289 1591 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
CHD3Q12873 RNU6-386P-201ENST00000362650 107 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 Y_RNA.355-201ENST00000365462 98 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 MTCO3P30-201ENST00000426425 670 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AL591719.1-201ENST00000444669 744 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 RPS24P6-201ENST00000452670 400 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AL031183.1-201ENST00000457667 207 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 RPL38P4-201ENST00000502376 214 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC1.73□□□□□ -2.13
CHD3Q12873 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC022634.1-201ENST00000520765 532 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC012640.5-201ENST00000623897 319 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CHD3Q12873 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 RNU6-263P-201ENST00000363811 107 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 RNA5SP160-201ENST00000364866 120 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 MIR9-3-201ENST00000385084 90 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CHD3Q12873 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD3Q12873 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC010285.1-201ENST00000470580 392 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AC017007.3-201ENST00000479865 435 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD3Q12873 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD3Q12873 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC1.73□□□□□ -2.13
CHD3Q12873 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 FABP5P6-201ENST00000510588 409 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC004923.2-201ENST00000529649 369 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 CASP1-212ENST00000531166 300 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD3Q12873 LRRC37A5P-203ENST00000580181 585 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.73□□□□□ -2.13
CHD3Q12873 AC010738.1-201ENST00000604970 987 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 AL391597.1-201ENST00000618707 694 ntBASIC1.73□□□□□ -2.13
CHD3Q12873 MIRLET7G-201ENST00000362280 84 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 RNU6-173P-201ENST00000364215 104 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 RNU6-1181P-201ENST00000384191 106 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AL136372.1-201ENST00000403060 228 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms