Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
VCANP13611 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.42□□□□□ -2.18
VCANP13611 FAM35CP-201ENST00000554755 2470 ntBASIC1.42□□□□□ -2.18
VCANP13611 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
VCANP13611 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
VCANP13611 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.42□□□□□ -2.18
VCANP13611 AC114973.1-201ENST00000429057 632 ntBASIC1.42□□□□□ -2.18
VCANP13611 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
VCANP13611 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.42□□□□□ -2.18
VCANP13611 RNA5SP384-201ENST00000516615 116 ntBASIC1.42□□□□□ -2.18
VCANP13611 RNU1-92P-201ENST00000517017 135 ntBASIC1.42□□□□□ -2.18
VCANP13611 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.42□□□□□ -2.18
VCANP13611 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.42□□□□□ -2.18
VCANP13611 Y_RNA.518-201ENST00000384552 113 ntBASIC1.42□□□□□ -2.18
VCANP13611 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
VCANP13611 MCTS2P-201ENST00000394552 546 ntBASIC1.42□□□□□ -2.18
VCANP13611 ZNF271P-202ENST00000465539 1970 ntBASIC1.42□□□□□ -2.18
VCANP13611 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
VCANP13611 RNA5SP127-201ENST00000411051 133 ntBASIC1.42□□□□□ -2.18
VCANP13611 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.42□□□□□ -2.18
VCANP13611 AL020996.3-201ENST00000606617 222 ntBASIC1.42□□□□□ -2.18
VCANP13611 AC010487.4-201ENST00000637027 61 ntBASIC1.42□□□□□ -2.18
VCANP13611 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.41□□□□□ -2.18
VCANP13611 SNRPEP2-201ENST00000397592 279 ntBASIC1.41□□□□□ -2.18
VCANP13611 NPM1P52-201ENST00000518264 846 ntBASIC1.41□□□□□ -2.18
VCANP13611 MIR3618-201ENST00000580330 88 ntBASIC1.41□□□□□ -2.18
VCANP13611 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
VCANP13611 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
VCANP13611 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
VCANP13611 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
VCANP13611 AL157827.1-201ENST00000447622 132 ntBASIC1.41□□□□□ -2.18
VCANP13611 RPS29P20-201ENST00000489592 171 ntBASIC1.41□□□□□ -2.18
VCANP13611 SNX5P1-201ENST00000505757 1041 ntBASIC1.41□□□□□ -2.18
VCANP13611 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.41□□□□□ -2.18
VCANP13611 AC139103.1-201ENST00000534696 1030 ntBASIC1.41□□□□□ -2.18
VCANP13611 AC006254.3-201ENST00000603353 884 ntBASIC1.41□□□□□ -2.18
VCANP13611 AL158801.5-201ENST00000623123 465 ntBASIC1.41□□□□□ -2.18
VCANP13611 FO624990.1-201ENST00000636373 85 ntBASIC1.41□□□□□ -2.18
VCANP13611 AC138649.5-201ENST00000637456 137 ntBASIC1.41□□□□□ -2.18
VCANP13611 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
VCANP13611 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
VCANP13611 HSPD1P16-201ENST00000402302 394 ntBASIC1.41□□□□□ -2.18
VCANP13611 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.41□□□□□ -2.18
VCANP13611 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
VCANP13611 AL121917.1-203ENST00000605534 577 ntBASIC1.41□□□□□ -2.18
VCANP13611 AC111188.2-201ENST00000529697 1387 ntBASIC1.4□□□□□ -2.18
VCANP13611 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.4□□□□□ -2.18
VCANP13611 HMGN1P14-201ENST00000412459 517 ntBASIC1.4□□□□□ -2.19
VCANP13611 MTND2P9-201ENST00000422293 931 ntBASIC1.4□□□□□ -2.19
VCANP13611 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.4□□□□□ -2.19
VCANP13611 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.4□□□□□ -2.19
VCANP13611 RPL30P6-201ENST00000475925 342 ntBASIC1.4□□□□□ -2.19
VCANP13611 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.4□□□□□ -2.19
VCANP13611 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.4□□□□□ -2.19
VCANP13611 MIR3973-201ENST00000579824 107 ntBASIC1.4□□□□□ -2.19
VCANP13611 AC123912.3-201ENST00000600907 1367 ntBASIC1.4□□□□□ -2.19
VCANP13611 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.19
VCANP13611 RPL19P1-201ENST00000411635 428 ntBASIC1.4□□□□□ -2.19
VCANP13611 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC1.4□□□□□ -2.19
VCANP13611 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC1.4□□□□□ -2.19
VCANP13611 PRELID2P1-201ENST00000552837 301 ntBASIC1.4□□□□□ -2.19
VCANP13611 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.4□□□□□ -2.19
VCANP13611 DUXAP11-201ENST00000603858 526 ntBASIC1.39□□□□□ -2.19
VCANP13611 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
VCANP13611 SEC63P1-201ENST00000425785 1258 ntBASIC1.39□□□□□ -2.19
VCANP13611 AL353718.1-201ENST00000451028 517 ntBASIC1.39□□□□□ -2.19
VCANP13611 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.39□□□□□ -2.19
VCANP13611 HSPE1P3-201ENST00000559254 309 ntBASIC1.39□□□□□ -2.19
VCANP13611 MIR4448-201ENST00000584360 86 ntBASIC1.39□□□□□ -2.19
VCANP13611 AC013553.2-201ENST00000604244 589 ntBASIC1.39□□□□□ -2.19
VCANP13611 AL445493.3-201ENST00000619568 477 ntBASIC1.39□□□□□ -2.19
VCANP13611 RPS27AP10-201ENST00000496103 208 ntBASIC1.39□□□□□ -2.19
VCANP13611 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.39□□□□□ -2.19
VCANP13611 OR4K8P-201ENST00000578842 1048 ntBASIC1.39□□□□□ -2.19
VCANP13611 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.38□□□□□ -2.19
VCANP13611 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.38□□□□□ -2.19
VCANP13611 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.38□□□□□ -2.19
VCANP13611 OR10R1P-201ENST00000441524 1141 ntBASIC1.38□□□□□ -2.19
VCANP13611 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.38□□□□□ -2.19
VCANP13611 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
VCANP13611 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
VCANP13611 AC244636.1-201ENST00000421152 228 ntBASIC1.38□□□□□ -2.19
VCANP13611 HSPE1P4-201ENST00000550617 308 ntBASIC1.38□□□□□ -2.19
VCANP13611 AL049838.1-201ENST00000563647 981 ntBASIC1.38□□□□□ -2.19
VCANP13611 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
VCANP13611 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC1.38□□□□□ -2.19
VCANP13611 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.38□□□□□ -2.19
VCANP13611 AC092902.1-201ENST00000486999 259 ntBASIC1.38□□□□□ -2.19
VCANP13611 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.38□□□□□ -2.19
VCANP13611 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.38□□□□□ -2.19
VCANP13611 AC005498.1-201ENST00000592125 465 ntBASIC1.38□□□□□ -2.19
VCANP13611 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
VCANP13611 AC002524.1-201ENST00000411687 547 ntBASIC1.37□□□□□ -2.19
VCANP13611 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC1.37□□□□□ -2.19
VCANP13611 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.37□□□□□ -2.19
VCANP13611 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.37□□□□□ -2.19
VCANP13611 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.37□□□□□ -2.19
VCANP13611 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC1.37□□□□□ -2.19
VCANP13611 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.37□□□□□ -2.19
VCANP13611 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms