Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RNU5A-8P-201ENST00000364102 114 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AL359837.1-201ENST00000381357 287 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 U8.11-201ENST00000384699 133 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 U8.12-201ENST00000384701 133 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RNU6-55P-201ENST00000411092 107 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RNU6-954P-201ENST00000411355 107 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RNA5SP107-201ENST00000411358 122 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC068533.1-201ENST00000418542 415 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC011233.1-201ENST00000422812 283 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RPS27AP14-201ENST00000422868 454 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AL445584.1-201ENST00000431451 330 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 MTND5P2-201ENST00000442927 1142 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RPS3AP46-201ENST00000448352 682 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC006539.3-201ENST00000454258 129 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 U8.18-201ENST00000459285 133 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RN7SL594P-201ENST00000470590 287 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 ACTR3P3-201ENST00000480448 893 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 RAC1P5-201ENST00000512182 576 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 PAICSP4-201ENST00000517543 1253 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 DEFB108A-201ENST00000530110 222 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 ZNF321P-202ENST00000550843 495 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 DUXAP6-201ENST00000553858 601 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC007954.1-201ENST00000554198 494 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 GTF2IP22-201ENST00000554443 182 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC009094.1-201ENST00000564443 426 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 MTATP6P24-201ENST00000576835 677 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC022146.1-201ENST00000595307 847 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC008751.2-201ENST00000597885 980 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 SNHG22-203ENST00000617833 660 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 AC017037.3-201ENST00000625016 472 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 CR383658.2-201ENST00000547576 1525 ntBASIC2.88□□□□□ -1.95
FOXA2Q9Y261 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA2Q9Y261 ZNF826P-207ENST00000622273 1910 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 TAS2R15P-201ENST00000390674 928 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 RPL17P12-201ENST00000413391 526 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 BTF3L4P3-201ENST00000418879 476 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL035423.1-201ENST00000420331 213 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC092047.1-201ENST00000424997 240 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL593851.1-201ENST00000426171 157 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 BX890604.2-201ENST00000427883 474 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC018644.1-201ENST00000429934 551 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 RPL37P21-201ENST00000435890 276 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 HMGB3P11-201ENST00000440127 604 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC005094.1-201ENST00000440420 368 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL133547.1-201ENST00000448546 220 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 MRPS31P2-201ENST00000451581 518 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 SNORD105B-201ENST00000458770 79 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 RPL37P6-201ENST00000460682 294 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC023598.1-201ENST00000472521 361 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC233702.1-201ENST00000482905 502 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AL160314.1-201ENST00000490836 438 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC138853.1-201ENST00000503549 823 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 RN7SKP18-201ENST00000516005 275 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 RNU6-64P-201ENST00000517119 105 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC023632.4-201ENST00000517783 191 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC093331.1-201ENST00000521474 169 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC026333.2-201ENST00000542164 106 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 AC090888.1-201ENST00000561335 1141 ntBASIC2.87□□□□□ -1.95
FOXA2Q9Y261 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.87□□□□□ -1.95
FOXA2Q9Y261 PCMTD1P2-201ENST00000565017 355 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms