Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AL391646.1-201ENST00000603860 190 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC104458.1-201ENST00000608243 463 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC093838.1-201ENST00000613014 469 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC009161.2-201ENST00000624626 138 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC005609.4-201ENST00000625071 447 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 OR1S2-201ENST00000302592 978 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 OR5J1P-201ENST00000313544 939 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-432P-201ENST00000384196 109 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-456P-201ENST00000384493 107 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL391417.1-201ENST00000404100 426 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC099677.1-201ENST00000420575 175 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC122718.1-201ENST00000439448 744 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL353572.1-201ENST00000442490 417 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL162151.2-201ENST00000448875 158 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 FAM133DP-201ENST00000464802 691 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL049714.1-201ENST00000466686 347 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 FCF1P3-201ENST00000496394 590 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC021146.1-201ENST00000511202 716 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC105914.1-201ENST00000511798 226 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 Y_RNA.693-201ENST00000516641 110 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC109635.3-201ENST00000529536 185 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL133271.1-201ENST00000538229 291 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL512360.1-201ENST00000555346 234 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AL359212.1-201ENST00000556608 614 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC025678.1-201ENST00000567861 338 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC090616.5-202ENST00000582111 297 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC010680.3-201ENST00000604215 520 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 MIR378J-201ENST00000611988 109 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 MIR6130-201ENST00000619419 109 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC139792.3-201ENST00000623525 224 ntBASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LIMCH1Q9UPQ0 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-1120P-201ENST00000362988 108 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 U3.11-201ENST00000364476 212 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 MIR124-3-201ENST00000384866 87 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 MIR3074-201ENST00000384885 81 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 RNA5SP424-201ENST00000390988 115 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 RNA5SP239-201ENST00000410218 129 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-712P-201ENST00000410558 100 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 MTATP6P18-201ENST00000417994 673 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 MTATP6P23-201ENST00000440153 476 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 WASF1P1-201ENST00000447560 1131 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC140076.1-201ENST00000449897 361 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 NANOGP10-201ENST00000453325 895 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC146944.2-203ENST00000502493 354 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC116353.2-201ENST00000505332 712 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC139495.1-202ENST00000513164 354 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 SCARNA14-201ENST00000516903 136 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC018630.1-201ENST00000541376 925 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms