Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MTND2P21-201ENST00000436242 1042 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC104057.1-201ENST00000515547 497 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 MIR4419B-201ENST00000577260 68 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC245036.5-201ENST00000596330 847 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC113368.1-201ENST00000603736 382 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 SGO1P2-201ENST00000429458 1589 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 RPL17P12-201ENST00000413391 526 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AL590623.1-201ENST00000427864 105 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 ZNF736P6Y-201ENST00000447526 1213 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 RPS20P24-201ENST00000457473 361 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AC013444.2-201ENST00000603317 787 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AC025811.1-201ENST00000604312 472 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AC004775.1-201ENST00000607389 753 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AC012150.2-201ENST00000621300 544 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.75□□□□□ -2.13
SCN3AQ9NY46 Z82209.1-201ENST00000422141 2135 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 AC026241.1-201ENST00000517873 2142 ntBASIC1.75□□□□□ -2.13
SCN3AQ9NY46 RNU4-23P-201ENST00000362839 140 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 MIR493-201ENST00000385254 89 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AL133384.1-201ENST00000412744 351 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 LINC01347-201ENST00000417964 355 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 CCNB1IP1P3-201ENST00000454702 829 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC108210.2-201ENST00000503681 201 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC002064.3-201ENST00000623448 346 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC010680.1-201ENST00000590024 3590 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 RNU6-891P-201ENST00000384280 111 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 RNU6-712P-201ENST00000410558 100 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 OFD1P18Y-201ENST00000420889 959 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC234781.2-201ENST00000426370 994 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AL031659.1-201ENST00000447075 539 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 RPL23AP42-201ENST00000471152 471 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC135721.1-201ENST00000497954 479 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 MLLT10P2-201ENST00000506434 249 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 IGKV2D-36-201ENST00000518643 226 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 IGLV3-17-201ENST00000519099 244 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 PTK2-220ENST00000520151 573 ntTSL 4 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC1.74□□□□□ -2.13
SCN3AQ9NY46 XIAPP1-201ENST00000603162 600 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AL355812.1-201ENST00000603215 216 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 AC068880.5-201ENST00000624331 290 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.74□□□□□ -2.13
SCN3AQ9NY46 MTND4P23-201ENST00000447723 1363 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 KPNA2P1-201ENST00000458289 1591 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 RNU6-1243P-201ENST00000364028 107 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 RNU6-730P-201ENST00000383954 104 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 RNU6-821P-201ENST00000390995 107 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 MIR1323-201ENST00000408090 73 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 SUMO1P4-201ENST00000429430 302 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 NAMPTP2-201ENST00000505629 1115 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 RNU6-27P-201ENST00000516146 107 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 RN7SKP40-201ENST00000517211 242 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC121758.2-201ENST00000553271 193 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC009032.1-201ENST00000617574 431 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 SNHG22-203ENST00000617833 660 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms