Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 RNA5SP402-201ENST00000517148 110 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 MTCO1P47-201ENST00000523889 1271 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AC011260.1-201ENST00000578420 472 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 MIR5092-201ENST00000583139 88 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AC015688.2-201ENST00000584523 262 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 VN1R83P-201ENST00000595685 445 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AC012468.1-201ENST00000604888 430 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AL158050.2-201ENST00000605336 568 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AC069545.1-201ENST00000605671 358 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AF129408.1-201ENST00000608767 431 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AL121652.1-201ENST00000608851 448 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AL161734.1-201ENST00000609720 557 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AL049777.1-201ENST00000622740 518 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AC004009.2-201ENST00000623016 728 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AL356585.4-201ENST00000623078 1229 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 MIR1322-201ENST00000638013 71 ntBASIC2.34□□□□□ -2.03
EXOSC4Q9NPD3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
EXOSC4Q9NPD3 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
EXOSC4Q9NPD3 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
EXOSC4Q9NPD3 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 RNU4-51P-201ENST00000364206 140 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 RNU6-1180P-201ENST00000364935 107 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 MIR135A2-201ENST00000384854 100 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 RNU6-1197P-201ENST00000391183 107 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 MTND2P5-201ENST00000432656 1006 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 MTCYBP45-201ENST00000435243 565 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 MTCYBP11-201ENST00000447254 1109 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 RSL24D1P3-201ENST00000449255 495 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 TRGVB-201ENST00000453257 471 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC114322.1-201ENST00000506771 926 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC113420.1-201ENST00000507903 571 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC109464.2-201ENST00000510242 943 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC008837.2-201ENST00000513076 418 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 CR383656.7-201ENST00000548164 174 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC090616.3-201ENST00000582184 217 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 MIR4637-201ENST00000582405 84 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AL390838.2-201ENST00000602394 274 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC005014.3-201ENST00000605985 190 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC018645.2-201ENST00000609151 472 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC024257.5-201ENST00000612739 531 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AL442067.2-201ENST00000614033 363 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC023158.2-201ENST00000614876 543 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 AC009269.6-201ENST00000621778 588 ntBASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.33□□□□□ -2.04
EXOSC4Q9NPD3 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 NACA3P-201ENST00000359690 648 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 RNU6-270P-201ENST00000364131 105 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 RNU1-100P-201ENST00000365255 165 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 U8.8-201ENST00000365399 135 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AL162578.1-201ENST00000406202 378 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC019178.2-201ENST00000423595 505 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC009414.1-201ENST00000427200 443 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 RPL23AP76-201ENST00000441860 458 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 NANOGNBP1-201ENST00000448444 480 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AL353691.1-201ENST00000451332 387 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 MTATP6P14-201ENST00000455189 673 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 RPS29P26-201ENST00000477483 171 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC090453.1-201ENST00000495560 436 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 RNY4P37-201ENST00000516225 96 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 RNU6-798P-201ENST00000516912 103 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 SNORA31.21-201ENST00000517180 77 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC010376.1-201ENST00000522101 334 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 SETP7-201ENST00000552169 453 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AL132657.2-201ENST00000564417 358 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms