Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC011602.1-201ENST00000546484 331 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 SETP2-201ENST00000553886 926 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL356432.3-201ENST00000568952 465 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 MIR3118-1-201ENST00000581787 76 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 MIR3611-201ENST00000584484 83 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC005771.1-201ENST00000585581 349 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 BNIP3P8-201ENST00000597863 560 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 SEPT7P9-203ENST00000604116 343 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 RMST_8.1-201ENST00000610287 165 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL590282.1-201ENST00000610379 1136 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC022149.2-201ENST00000621061 203 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 U4.6-201ENST00000621618 127 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC243312.2-201ENST00000623340 601 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL159972.1-201ENST00000625150 448 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
NKX3-1Q99801 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC068647.1-201ENST00000489539 2265 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC007823.1-201ENST00000569932 1566 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
NKX3-1Q99801 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
NKX3-1Q99801 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC002546.1-201ENST00000588041 2504 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 RNU5E-8P-201ENST00000363502 116 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 Y_RNA.194-201ENST00000363985 102 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 RNU6-637P-201ENST00000384050 107 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 RNU2-43P-201ENST00000410306 190 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 MORF4L1P6-201ENST00000418771 268 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC069157.1-201ENST00000421749 137 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC233728.2-201ENST00000425348 757 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 RPL21P66-201ENST00000426566 466 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AL589872.1-201ENST00000426602 288 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AL133547.1-201ENST00000448546 220 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 PDSS1P2-201ENST00000449397 678 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC234775.1-201ENST00000454247 670 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 RPL7P15-201ENST00000461190 712 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 MTND1P3-201ENST00000484956 952 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC135721.1-201ENST00000497954 479 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 MIR2276-201ENST00000516886 89 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 RNU6-201P-201ENST00000517100 61 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 PAICSP4-201ENST00000517543 1253 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AP002963.1-201ENST00000530590 184 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 SNRPGP16-201ENST00000533275 226 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC135279.1-201ENST00000543493 504 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 CCNG2P1-201ENST00000549521 1000 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC024909.2-201ENST00000553035 286 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 RPL21P5-201ENST00000554662 472 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 MIR4425-201ENST00000580572 84 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC098614.4-201ENST00000607601 462 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC006023.2-201ENST00000609916 167 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AL732618.1-201ENST00000623251 301 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC091953.2-201ENST00000623979 160 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC068137.4-201ENST00000638485 296 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC091152.2-201ENST00000591628 2569 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 MTCO1P9-201ENST00000505577 1534 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC004972.1-201ENST00000623934 2209 ntBASIC3.07□□□□□ -1.92
NKX3-1Q99801 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.07□□□□□ -1.92
NKX3-1Q99801 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NKX3-1Q99801 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 RNY4P24-201ENST00000362735 96 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
NKX3-1Q99801 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NKX3-1Q99801 MTHFD2P2-201ENST00000407725 247 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC245054.1-201ENST00000420944 258 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AL353777.1-201ENST00000425552 326 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 DUTP6-201ENST00000425573 462 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms