Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC004852.3-201ENST00000614131 326 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC42Q96M95 AC009318.4-201ENST00000620496 486 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.24□□□□□ -2.05
CCDC42Q96M95 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC42Q96M95 AC006020.1-201ENST00000420179 1854 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 AC009812.4-201ENST00000569134 1805 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC42Q96M95 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC004944.1-201ENST00000517807 3059 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC42Q96M95 OR56A5-201ENST00000340110 738 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 SNORA11.4-201ENST00000408823 129 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 Z92545.1-201ENST00000411782 234 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 XKRY2-201ENST00000442362 1093 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC42Q96M95 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC087588.1-201ENST00000462203 316 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 RPS27P21-201ENST00000486977 252 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC025755.1-201ENST00000521306 278 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 MIR3117-201ENST00000584034 78 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC42Q96M95 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC009090.3-201ENST00000616553 565 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 AC090617.9-201ENST00000623751 147 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC42Q96M95 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC42Q96M95 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC42Q96M95 MTND5P6-201ENST00000422338 1798 ntBASIC2.23□□□□□ -2.05
CCDC42Q96M95 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AL137003.2-201ENST00000606924 2538 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 HSPE1P11-201ENST00000339579 310 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 RNA5SP27-201ENST00000363839 119 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC42Q96M95 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC42Q96M95 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 U3.20-201ENST00000390909 217 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 NDUFB4P4-201ENST00000404822 243 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 PNRC2P1-201ENST00000423940 420 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC090774.1-201ENST00000435925 246 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AL714022.1-201ENST00000439897 151 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 USP9YP8-201ENST00000441913 500 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 IFNA11P-201ENST00000446352 526 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC116337.2-201ENST00000477662 156 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AL135752.1-201ENST00000479477 471 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 FAM172BP-201ENST00000487497 1089 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC022493.1-201ENST00000492984 337 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 RPL30P5-201ENST00000494923 336 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC42Q96M95 KLRA1P-201ENST00000503499 986 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC114781.4-201ENST00000513707 639 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 RNU6-27P-201ENST00000516146 107 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AP003122.3-201ENST00000526316 255 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC42Q96M95 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AC079791.1-201ENST00000605356 973 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 AP005137.2-201ENST00000609238 400 ntBASIC2.22□□□□□ -2.05
CCDC42Q96M95 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC42Q96M95 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC42Q96M95 AL136360.1-201ENST00000503377 1900 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC42Q96M95 RNU6-1155P-201ENST00000363554 107 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 AL023807.1-201ENST00000407932 359 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 AL358075.3-201ENST00000426289 226 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 RPS26P30-201ENST00000443431 335 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 KPNA2P1-201ENST00000458289 1591 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 SSR3-208ENST00000496050 579 ntTSL 4 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 EIF4EP3-201ENST00000498782 656 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms