Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.33□□□□□ -2.2
USF3Q68DE3 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.33□□□□□ -2.2
USF3Q68DE3 WWP1P1-201ENST00000466609 2769 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
USF3Q68DE3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
USF3Q68DE3 RNU6-1027P-201ENST00000383998 107 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 AL590084.1-201ENST00000407885 387 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 U3.40-201ENST00000408706 208 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 RNU2-71P-201ENST00000411395 189 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC1.33□□□□□ -2.2
USF3Q68DE3 AC090096.1-201ENST00000489168 390 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 RPS15AP36-201ENST00000492022 382 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 AC010625.1-201ENST00000511296 403 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 RN7SKP40-201ENST00000517211 242 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC1.33□□□□□ -2.2
USF3Q68DE3 AC084851.1-201ENST00000529105 249 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC1.33□□□□□ -2.2
USF3Q68DE3 FAM106CP-201ENST00000582212 507 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 YWHAQP7-201ENST00000603536 658 ntBASIC1.33□□□□□ -2.2
USF3Q68DE3 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
USF3Q68DE3 AL596028.1-201ENST00000326971 197 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RNU4-13P-201ENST00000364019 141 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RPL21P1-201ENST00000399532 476 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC1.32□□□□□ -2.2
USF3Q68DE3 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC1.32□□□□□ -2.2
USF3Q68DE3 RAB9AP5-201ENST00000437794 597 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RAB9AP2-201ENST00000443911 597 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 AC009474.2-201ENST00000451383 136 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RPL5P13-201ENST00000462840 709 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RPL37P6-202ENST00000464216 403 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 TOMM22P6-201ENST00000465035 409 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 AC109464.2-201ENST00000510242 943 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RNA5SP220-201ENST00000516298 104 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 AC098848.2-201ENST00000588023 330 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.32□□□□□ -2.2
USF3Q68DE3 AL157700.1-201ENST00000561973 1432 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 MIR96-201ENST00000362288 78 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RNU6-60P-201ENST00000364792 103 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.32□□□□□ -2.2
USF3Q68DE3 RPL30P3-201ENST00000424262 333 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 AL451074.3-201ENST00000437709 472 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 PIGFP3-201ENST00000441918 722 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 USP9YP10-201ENST00000454868 628 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 RBM43P1-201ENST00000476891 1081 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.32□□□□□ -2.2
USF3Q68DE3 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC1.32□□□□□ -2.2
USF3Q68DE3 AC010735.1-201ENST00000567305 1026 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 OR4K8P-201ENST00000578842 1048 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 AC011468.4-201ENST00000603942 409 ntBASIC1.32□□□□□ -2.2
USF3Q68DE3 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.32□□□□□ -2.2
USF3Q68DE3 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
USF3Q68DE3 NUP58P1-201ENST00000502546 1738 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 SNORA16.1-201ENST00000364597 132 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 Z75741.2-201ENST00000417272 1167 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC1.31□□□□□ -2.2
USF3Q68DE3 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC1.31□□□□□ -2.2
USF3Q68DE3 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.31□□□□□ -2.2
USF3Q68DE3 AC008526.1-201ENST00000509149 338 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
USF3Q68DE3 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC1.31□□□□□ -2.2
USF3Q68DE3 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.31□□□□□ -2.2
USF3Q68DE3 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.31□□□□□ -2.2
USF3Q68DE3 MIR4421-201ENST00000578133 69 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AP001180.3-201ENST00000582221 145 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 DUXAP9-208ENST00000622815 614 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AL359740.1-201ENST00000624340 592 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AC116618.1-201ENST00000634617 774 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AL136164.4-201ENST00000625013 2135 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.31□□□□□ -2.2
USF3Q68DE3 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.31□□□□□ -2.2
USF3Q68DE3 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
USF3Q68DE3 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
USF3Q68DE3 AC093536.2-201ENST00000565257 1406 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
USF3Q68DE3 SNORD48-201ENST00000364953 64 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AL356057.2-201ENST00000403318 432 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 RPS3AP9-201ENST00000417027 792 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 BX510359.4-201ENST00000423750 193 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AL354695.1-201ENST00000427935 228 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 FO393414.1-201ENST00000428697 1184 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 HMGN2P20-201ENST00000437531 273 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.31□□□□□ -2.2
USF3Q68DE3 ATP5J2P3-201ENST00000451550 258 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 HNRNPDLP3-201ENST00000456745 380 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.31□□□□□ -2.2
USF3Q68DE3 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.31□□□□□ -2.2
USF3Q68DE3 RPL7P18-201ENST00000478965 734 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC1.31□□□□□ -2.2
USF3Q68DE3 RN7SKP234-201ENST00000517173 224 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AC011604.1-201ENST00000545978 196 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.31□□□□□ -2.2
USF3Q68DE3 MIR6779-201ENST00000617283 64 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 AP003072.4-201ENST00000624580 310 ntBASIC1.31□□□□□ -2.2
USF3Q68DE3 RNF6P1-201ENST00000444889 1784 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-53P-201ENST00000365367 106 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AL136133.1-201ENST00000413694 376 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.3□□□□□ -2.2
USF3Q68DE3 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms