Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL355810.1-201ENST00000614629 552 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC104010.1-201ENST00000616889 150 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC068831.7-201ENST00000616954 363 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC095031.1-201ENST00000623685 672 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AL159972.1-201ENST00000625150 448 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PDLIM3Q53GG5 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 MTND5P33-201ENST00000571250 1450 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 RNU6-1155P-201ENST00000363554 107 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 SNORA40.3-201ENST00000390964 122 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 FCF1P10-201ENST00000407590 479 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 MIR1289-1-201ENST00000408836 144 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 RPL7AP73-201ENST00000413490 353 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 USP9YP13-201ENST00000417797 480 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL589823.1-201ENST00000429577 183 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 DLGAP5P1-201ENST00000430307 464 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC108734.1-201ENST00000439549 399 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 RABEPKP1-201ENST00000440529 1026 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 TPT1P14-201ENST00000448018 505 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AP1S2P1-201ENST00000457344 379 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 RN7SL293P-201ENST00000481765 281 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC020893.1-201ENST00000502452 580 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC112204.1-201ENST00000502591 103 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC096751.1-202ENST00000502691 1067 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 NDUFB4P2-201ENST00000509515 391 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC022447.1-201ENST00000515358 464 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL391156.1-201ENST00000554965 554 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL157394.1-201ENST00000562983 1224 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC137800.2-201ENST00000574375 120 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 MTCYBP33-201ENST00000575007 1130 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 BNIP3P8-201ENST00000597863 560 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC112191.3-201ENST00000604371 277 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL139286.2-201ENST00000606838 396 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL391813.2-201ENST00000609113 322 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC107294.1-201ENST00000609524 467 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC025594.3-201ENST00000613068 790 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AL139089.1-201ENST00000620372 975 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC009878.1-201ENST00000621819 340 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC010149.2-201ENST00000637608 315 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC110774.1-201ENST00000623567 2018 ntBASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PDLIM3Q53GG5 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC092326.2-201ENST00000624772 1561 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC011460.1-201ENST00000636268 1834 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 Y_RNA.201-201ENST00000364052 96 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 MIR128-1-201ENST00000384921 82 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 RPS3AP36-201ENST00000398190 775 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 Y_RNA.598-201ENST00000410480 95 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 RN7SKP53-201ENST00000411337 315 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 RHEBP3-201ENST00000411920 351 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 VN1R108P-201ENST00000431580 830 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 FTH1P1-201ENST00000437933 532 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC092641.1-201ENST00000440229 772 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 ST13P20-201ENST00000447996 1065 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 RPS17P13-201ENST00000448974 407 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 SNORD121B-201ENST00000458838 81 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms