Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 RNA5SP310-201ENST00000459084 116 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC004263.1-201ENST00000479327 332 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 SNORA70.16-201ENST00000516390 95 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 RN7SKP60-201ENST00000516985 239 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 UBTFL10-201ENST00000528532 562 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 DUXAP5-201ENST00000529668 529 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 ZNF321P-202ENST00000550843 495 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC009094.1-201ENST00000564443 426 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 ELOCP29-201ENST00000588193 334 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AP001429.1-201ENST00000602568 530 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC090186.1-201ENST00000605991 572 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC009570.1-201ENST00000609599 745 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AL591516.1-201ENST00000611326 274 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 MIR6130-201ENST00000619419 109 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC091304.6-201ENST00000619761 202 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC120349.3-201ENST00000624377 529 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC097655.1-201ENST00000635075 318 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC005832.2-201ENST00000538921 1430 ntBASIC3.09□□□□□ -1.92
TNFRSF4P43489 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.09□□□□□ -1.92
TNFRSF4P43489 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
TNFRSF4P43489 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
TNFRSF4P43489 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC092326.2-201ENST00000624772 1561 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
TNFRSF4P43489 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
TNFRSF4P43489 OR5J1P-201ENST00000313544 939 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 SNORA4.1-201ENST00000364263 144 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
TNFRSF4P43489 RNU6-157P-201ENST00000383957 107 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 RNU6-1207P-201ENST00000384343 107 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC119751.3-201ENST00000399720 670 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL356421.1-201ENST00000403255 413 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL139281.1-201ENST00000422120 335 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC233728.2-201ENST00000425348 757 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL139132.1-201ENST00000431587 344 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 SNORD121B-201ENST00000458838 81 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL049830.2-201ENST00000480072 201 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL359273.1-201ENST00000510918 627 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 RNA5SP367-201ENST00000516557 118 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC107016.2-201ENST00000547968 190 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 MIR3921-201ENST00000577308 85 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL139344.1-201ENST00000605228 195 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL158211.4-201ENST00000606988 584 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AL450472.3-201ENST00000615578 367 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC006111.3-201ENST00000622137 383 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC017037.3-201ENST00000625016 472 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.08□□□□□ -1.92
TNFRSF4P43489 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC104454.1-201ENST00000421341 1401 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 AC092447.10-201ENST00000620607 1652 ntBASIC3.08□□□□□ -1.92
TNFRSF4P43489 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
TNFRSF4P43489 AL021368.2-201ENST00000606125 5352 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
TNFRSF4P43489 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 UBE2V1P2-201ENST00000397758 440 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 AL138878.1-201ENST00000405131 347 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 MIR1290-201ENST00000408735 78 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 TMEM167AP1-201ENST00000423409 219 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 MTND5P25-201ENST00000430499 799 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 AL008629.1-201ENST00000438615 184 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 HMGN1P18-201ENST00000457642 277 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 MTCO2P6-201ENST00000463134 685 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 RPL30P9-201ENST00000465586 330 ntBASIC3.07□□□□□ -1.92
TNFRSF4P43489 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.07□□□□□ -1.92
TNFRSF4P43489 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms