Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
MSX2P35548 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.73
MSX2P35548 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 MTND5P1-201ENST00000445440 1375 ntBASIC4.27□□□□□ -1.73
MSX2P35548 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 AC007823.1-201ENST00000569932 1566 ntBASIC4.27□□□□□ -1.73
MSX2P35548 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 AP001350.1-201ENST00000601906 1524 ntBASIC4.27□□□□□ -1.73
MSX2P35548 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX2P35548 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 RNU1-130P-201ENST00000363930 160 ntBASIC4.27□□□□□ -1.73
MSX2P35548 Y_RNA.197-201ENST00000364004 102 ntBASIC4.27□□□□□ -1.73
MSX2P35548 Y_RNA.378-201ENST00000365652 113 ntBASIC4.27□□□□□ -1.73
MSX2P35548 RNU6-639P-201ENST00000384074 107 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AL049697.2-201ENST00000403708 294 ntBASIC4.27□□□□□ -1.73
MSX2P35548 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 OR6C66P-201ENST00000414917 930 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX2P35548 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 RPL32P28-201ENST00000443577 397 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AC112498.1-201ENST00000444401 332 ntBASIC4.27□□□□□ -1.73
MSX2P35548 H2AFZP5-201ENST00000446960 382 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AL162395.1-201ENST00000457882 422 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AC022034.3-201ENST00000471393 478 ntBASIC4.27□□□□□ -1.73
MSX2P35548 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.27□□□□□ -1.73
MSX2P35548 AC106872.2-201ENST00000494303 480 ntBASIC4.27□□□□□ -1.73
MSX2P35548 RNA5SP503-201ENST00000517047 117 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 AC022634.1-201ENST00000520765 532 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 AP000889.2-201ENST00000532684 490 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AC069240.1-201ENST00000548774 375 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.27□□□□□ -1.73
MSX2P35548 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX2P35548 AL592436.1-201ENST00000605135 558 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AL590099.1-201ENST00000615276 138 ntBASIC4.27□□□□□ -1.73
MSX2P35548 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX2P35548 uc_338.34-201ENST00000617467 174 ntBASIC4.27□□□□□ -1.73
MSX2P35548 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.27□□□□□ -1.73
MSX2P35548 AC011155.2-201ENST00000623202 216 ntBASIC4.27□□□□□ -1.73
MSX2P35548 AC067931.1-201ENST00000624190 671 ntBASIC4.27□□□□□ -1.73
MSX2P35548 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.27□□□□□ -1.73
MSX2P35548 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSX2P35548 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
MSX2P35548 AL359893.1-201ENST00000447628 1580 ntBASIC4.27□□□□□ -1.73
MSX2P35548 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 RN7SKP95-201ENST00000362860 303 ntBASIC4.26□□□□□ -1.73
MSX2P35548 SNORD74.4-201ENST00000364129 80 ntBASIC4.26□□□□□ -1.73
MSX2P35548 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 RNU6-1105P-201ENST00000384774 107 ntBASIC4.26□□□□□ -1.73
MSX2P35548 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 MTCYBP4-201ENST00000401524 249 ntBASIC4.26□□□□□ -1.73
MSX2P35548 RN7SKP158-201ENST00000410453 326 ntBASIC4.26□□□□□ -1.73
MSX2P35548 RNU2-15P-201ENST00000410692 191 ntBASIC4.26□□□□□ -1.73
MSX2P35548 RNU6-1304P-201ENST00000411374 106 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AC113618.1-201ENST00000416747 285 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AL358176.2-201ENST00000425769 204 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AL772161.1-201ENST00000439130 476 ntBASIC4.26□□□□□ -1.73
MSX2P35548 RPL23AP33-201ENST00000442301 452 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AC020550.1-201ENST00000447385 163 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 RPL29P29-201ENST00000448725 423 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.26□□□□□ -1.73
MSX2P35548 snoU13.20-201ENST00000459180 104 ntBASIC4.26□□□□□ -1.73
MSX2P35548 RPL7AP6-201ENST00000477943 801 ntBASIC4.26□□□□□ -1.73
MSX2P35548 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.26□□□□□ -1.73
MSX2P35548 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.26□□□□□ -1.73
MSX2P35548 AC093303.1-201ENST00000514549 295 ntBASIC4.26□□□□□ -1.73
MSX2P35548 RNU2-10P-201ENST00000516375 211 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.26□□□□□ -1.73
MSX2P35548 AP000857.1-201ENST00000532151 543 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.26□□□□□ -1.73
MSX2P35548 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.26□□□□□ -1.73
MSX2P35548 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 AC093012.1-202ENST00000549403 582 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AC105129.1-201ENST00000560250 297 ntBASIC4.26□□□□□ -1.73
MSX2P35548 MIR5583-1-201ENST00000580941 59 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AC133644.2-201ENST00000608142 540 ntBASIC4.26□□□□□ -1.73
MSX2P35548 Mico1.1-201ENST00000611698 204 ntBASIC4.26□□□□□ -1.73
MSX2P35548 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 AC007546.1-201ENST00000619452 559 ntBASIC4.26□□□□□ -1.73
MSX2P35548 uc_338.22-201ENST00000622722 187 ntBASIC4.26□□□□□ -1.73
MSX2P35548 AC244517.12-201ENST00000623581 663 ntBASIC4.26□□□□□ -1.73
MSX2P35548 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 AC011266.1-201ENST00000624119 3569 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms