Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AP001893.2-201ENST00000526949 202 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 AK6P1-201ENST00000540219 478 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.41□□□□□ -1.7
SMARCA1P28370 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.41□□□□□ -1.7
SMARCA1P28370 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.41□□□□□ -1.7
SMARCA1P28370 AC087499.8-201ENST00000578406 226 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 MIR4644-201ENST00000579929 84 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
SMARCA1P28370 AL391646.1-201ENST00000603860 190 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AL049634.3-201ENST00000604968 457 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 SNORA62.6-201ENST00000606322 83 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AL356585.4-201ENST00000623078 1229 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.41□□□□□ -1.7
SMARCA1P28370 AP004289.2-201ENST00000444413 1457 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.41□□□□□ -1.7
SMARCA1P28370 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SMARCA1P28370 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SMARCA1P28370 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
SMARCA1P28370 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.4□□□□□ -1.7
SMARCA1P28370 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SMARCA1P28370 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
SMARCA1P28370 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SMARCA1P28370 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SMARCA1P28370 Y_RNA.1-201ENST00000352915 104 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
SMARCA1P28370 Y_RNA.450-201ENST00000384198 113 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SMARCA1P28370 AL078595.1-201ENST00000404458 226 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 CIR1P3-201ENST00000405137 479 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 RPS15AP12-201ENST00000419498 388 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 MTND1P2-201ENST00000430604 821 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 SNORA71B-202ENST00000439232 272 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 AC122718.1-201ENST00000439448 744 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 MTATP6P23-201ENST00000440153 476 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 USP9YP15-201ENST00000442391 422 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.4□□□□□ -1.71
SMARCA1P28370 AL500522.2-201ENST00000448562 343 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 HMGB3P22-202ENST00000451823 572 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 MTND1P12-201ENST00000455231 147 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 UBDP1-202ENST00000457888 382 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 FAM133DP-201ENST00000464802 691 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 AC092989.1-201ENST00000481235 277 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 AC007182.2-201ENST00000489251 402 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 AC078918.1-201ENST00000498515 228 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SMARCA1P28370 RNU6-1220P-201ENST00000517126 108 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.4□□□□□ -1.71
SMARCA1P28370 RPS3AP4-201ENST00000555161 764 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.4□□□□□ -1.71
SMARCA1P28370 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.4□□□□□ -1.71
SMARCA1P28370 AC006130.2-201ENST00000586202 326 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SMARCA1P28370 AL356321.1-201ENST00000621360 228 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 AC103858.2-201ENST00000621471 543 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 MIR3688-2-201ENST00000636963 87 ntBASIC4.4□□□□□ -1.71
SMARCA1P28370 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SMARCA1P28370 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SMARCA1P28370 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
SMARCA1P28370 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.4□□□□□ -1.71
SMARCA1P28370 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SMARCA1P28370 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
SMARCA1P28370 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SMARCA1P28370 RNU6-169P-201ENST00000365336 107 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
SMARCA1P28370 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.39□□□□□ -1.71
SMARCA1P28370 MIR134-201ENST00000385258 73 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SMARCA1P28370 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SMARCA1P28370 Y_RNA.604-201ENST00000410574 102 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 SNORA57.3-201ENST00000411095 141 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SMARCA1P28370 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.39□□□□□ -1.71
SMARCA1P28370 AC007389.2-201ENST00000434630 306 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC002486.1-201ENST00000435098 391 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 TIMM9P1-201ENST00000436122 256 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AL356535.1-201ENST00000440335 398 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.39□□□□□ -1.71
SMARCA1P28370 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.39□□□□□ -1.71
SMARCA1P28370 FAM92A1P2-202ENST00000504766 877 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC021146.1-201ENST00000511202 716 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC023141.12-201ENST00000512399 199 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC010493.1-201ENST00000513479 292 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC010342.1-201ENST00000514047 877 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 SNORA70.14-201ENST00000516205 110 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 RNU6-528P-201ENST00000516926 100 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 RNA5SP337-201ENST00000517007 109 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC022616.3-201ENST00000523940 148 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AP004371.1-201ENST00000525240 214 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.39□□□□□ -1.71
SMARCA1P28370 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.39□□□□□ -1.71
SMARCA1P28370 AL121603.1-201ENST00000553815 142 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC012182.1-201ENST00000570133 895 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC011451.2-201ENST00000604303 598 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC110741.2-201ENST00000605278 268 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AP002360.4-201ENST00000606980 481 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 AC012531.5-201ENST00000611375 151 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
SMARCA1P28370 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms