Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC009237.5-201ENST00000414271 501 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 AC093578.1-201ENST00000415219 368 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.33□□□□□ -1.88
LMX1BO60663 AL139413.1-201ENST00000421309 217 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 RPL21P109-201ENST00000422213 475 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 PSMA6P3-201ENST00000428242 164 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 AC133104.1-201ENST00000429100 218 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 AC002486.1-201ENST00000435098 391 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 RPS3AP12-201ENST00000443616 753 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.33□□□□□ -1.88
LMX1BO60663 AP001992.1-205ENST00000462248 379 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 PLGLA-201ENST00000465668 449 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 AC034222.1-201ENST00000494052 532 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 RN7SL323P-201ENST00000494712 295 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 AC105914.1-201ENST00000511798 226 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 AC093853.1-201ENST00000515689 483 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 Y_RNA.702-201ENST00000516843 96 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.33□□□□□ -1.88
LMX1BO60663 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.33□□□□□ -1.88
LMX1BO60663 AL845331.3-202ENST00000562856 261 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 AC025678.1-201ENST00000567861 338 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 MIR3167-201ENST00000579623 85 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 AL035413.2-201ENST00000604801 525 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 AC009994.1-201ENST00000606889 253 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.33□□□□□ -1.88
LMX1BO60663 AL356585.4-201ENST00000623078 1229 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 LRRC77P-213ENST00000637727 880 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
LMX1BO60663 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LMX1BO60663 AC008725.1-201ENST00000605123 2263 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AL021368.2-201ENST00000606125 5352 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
LMX1BO60663 RNU6-28P-201ENST00000362378 107 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 RNU6-797P-201ENST00000363101 109 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 Y_RNA.295-201ENST00000364918 102 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 RNA5SP97-201ENST00000365006 84 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 RNU6-114P-201ENST00000384704 105 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LMX1BO60663 BTBD10P2-201ENST00000404779 676 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 RNA5SP239-201ENST00000410218 129 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.32□□□□□ -1.88
LMX1BO60663 ZNF863P-201ENST00000426746 417 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 EZH2P1-201ENST00000431167 291 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 ARPC3P1-201ENST00000437218 533 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 SNORA71B-202ENST00000439232 272 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC092001.1-201ENST00000453012 261 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 MTND1P12-201ENST00000455231 147 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AMD1P1-201ENST00000457220 922 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC093767.1-201ENST00000504523 156 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 TXNP6-201ENST00000510190 310 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC110792.2-201ENST00000510278 224 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.32□□□□□ -1.88
LMX1BO60663 SNORD116-26-201ENST00000516006 96 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 RNU6-1220P-201ENST00000517126 108 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC022695.1-201ENST00000522089 237 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC109635.3-201ENST00000529536 185 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.32□□□□□ -1.88
LMX1BO60663 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC008752.3-201ENST00000588113 712 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC007363.1-201ENST00000604736 620 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AL049634.3-201ENST00000604968 457 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AP001330.5-201ENST00000607176 411 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 OR10AB1P-201ENST00000609613 938 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AL020991.1-201ENST00000612314 373 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AL596245.1-201ENST00000618994 362 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC079597.1-201ENST00000624306 508 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 AL034408.1-202ENST00000636088 415 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.32□□□□□ -1.88
LMX1BO60663 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
LMX1BO60663 CASC19-280ENST00000642102 1351 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 AC024560.2-201ENST00000507981 1497 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 AC073544.1-201ENST00000600110 1595 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LMX1BO60663 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms