Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC019176.1-201ENST00000518519 225 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AC083806.3-201ENST00000614016 455 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 NDUFS5P3-201ENST00000450668 321 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 RPL7P5-201ENST00000471472 736 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AL359273.1-201ENST00000510918 627 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 RNA5SP436-201ENST00000516020 115 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 MIR4716-201ENST00000579628 84 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AP005137.2-201ENST00000609238 400 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 MIR6078-201ENST00000611069 100 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 SNORA26.7-201ENST00000391288 122 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 AL033519.2-201ENST00000403958 392 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.44□□□□□ -2.18
CHD9Q3L8U1 MTCYBP12-201ENST00000440559 1134 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 AL031274.2-201ENST00000599419 203 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 AC112191.3-201ENST00000604371 277 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 AL590099.1-201ENST00000615276 138 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 AC138649.5-201ENST00000637456 137 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.44□□□□□ -2.18
CHD9Q3L8U1 TPMTP3-201ENST00000411928 735 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.44□□□□□ -2.18
CHD9Q3L8U1 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC1.44□□□□□ -2.18
CHD9Q3L8U1 AL591704.1-201ENST00000432574 275 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.44□□□□□ -2.18
CHD9Q3L8U1 CYP3A137P-201ENST00000562436 69 ntBASIC1.44□□□□□ -2.18
CHD9Q3L8U1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
CHD9Q3L8U1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC234781.2-201ENST00000426370 994 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 CKS1BP5-201ENST00000434172 273 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC107015.1-201ENST00000466902 747 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 GLYCAM1-201ENST00000546596 285 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 MIR5000-201ENST00000577717 103 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 RNY1P4-201ENST00000384595 115 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AIMP1P2-201ENST00000425294 312 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC011979.1-201ENST00000472300 483 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC008837.2-201ENST00000513076 418 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 RNU6-405P-201ENST00000516637 110 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 RNU6-467P-201ENST00000517027 110 ntBASIC1.43□□□□□ -2.18
CHD9Q3L8U1 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.43□□□□□ -2.18
CHD9Q3L8U1 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
CHD9Q3L8U1 RNU2-32P-201ENST00000411193 191 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AC099336.2-201ENST00000422457 254 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 RPL35AP22-201ENST00000436855 335 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AL353093.1-201ENST00000441292 436 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AC092902.1-201ENST00000486999 259 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AP003033.1-201ENST00000527244 415 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.42□□□□□ -2.18
CHD9Q3L8U1 PDCD5P1-201ENST00000543528 309 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC1.42□□□□□ -2.18
CHD9Q3L8U1 MIR7973-1-201ENST00000614683 76 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 HMGB3P10-201ENST00000434734 572 ntBASIC1.42□□□□□ -2.18
CHD9Q3L8U1 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC1.42□□□□□ -2.18
CHD9Q3L8U1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
CHD9Q3L8U1 RPS6P12-201ENST00000432491 726 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 AC021382.1-201ENST00000483523 359 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.41□□□□□ -2.18
CHD9Q3L8U1 uc_338.12-201ENST00000616344 181 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 SGO1P2-201ENST00000429458 1589 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 HMGN1P14-201ENST00000412459 517 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.41□□□□□ -2.18
CHD9Q3L8U1 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.41□□□□□ -2.18
CHD9Q3L8U1 AL391646.1-201ENST00000603860 190 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.41□□□□□ -2.18
CHD9Q3L8U1 AC006329.2-201ENST00000611491 394 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC1.41□□□□□ -2.18
CHD9Q3L8U1 Y_RNA.251-201ENST00000364551 99 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 MIR222-201ENST00000384992 110 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 SNORA40.6-201ENST00000391153 128 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 MTCO1P48-201ENST00000448024 1096 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 AC096992.1-201ENST00000459808 709 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.41□□□□□ -2.18
CHD9Q3L8U1 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.41□□□□□ -2.18
CHD9Q3L8U1 SNORA50A-202ENST00000629536 136 ntBASIC1.41□□□□□ -2.18
CHD9Q3L8U1 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
CHD9Q3L8U1 RNU1-139P-201ENST00000391307 165 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 MIR1304-201ENST00000408243 91 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.4□□□□□ -2.19
CHD9Q3L8U1 RNU7-157P-201ENST00000459600 66 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms