Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MRPL50P2-201ENST00000416821 482 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AL356095.1-201ENST00000417217 199 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC005094.1-201ENST00000440420 368 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AL662791.1-201ENST00000441992 928 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 CALM1P1-201ENST00000442082 433 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC007967.1-201ENST00000455422 1159 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 UBE2Q2P9-201ENST00000490086 202 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-1281P-201ENST00000516223 105 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 SCARNA24.1-201ENST00000516465 137 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 Y_RNA.704-201ENST00000516851 102 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 MTND1P35-201ENST00000526739 508 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AL121603.1-201ENST00000553815 142 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RPL23AP87-202ENST00000573039 466 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 OR4K8P-201ENST00000578842 1048 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC010680.3-201ENST00000604215 520 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 AC012603.1-201ENST00000606424 528 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RMST_9.1-201ENST00000619945 193 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 MIR4275-201ENST00000636486 87 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 MARK2P15-201ENST00000432204 2186 ntBASIC4□□□□□ -1.77
PTCHD3Q3KNS1 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
PTCHD3Q3KNS1 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 Y_RNA.295-201ENST00000364918 102 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 RNU6-867P-201ENST00000364956 107 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 Y_RNA.390-201ENST00000383932 102 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 MIR135A2-201ENST00000384854 100 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 MIR124-3-201ENST00000384866 87 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 MIR558-201ENST00000384920 94 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC108032.1-201ENST00000416706 207 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 ZNF90P2-204ENST00000419323 1075 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 SNRPEP10-201ENST00000420249 274 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AL117339.2-201ENST00000430475 180 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 RPS20P5-201ENST00000434808 360 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 HMGB1P31-201ENST00000437242 427 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 RPL7P54-201ENST00000438336 674 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 DDX3P2-201ENST00000446138 111 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 SNORD108-201ENST00000459332 71 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AL132838.2-201ENST00000492041 314 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC139783.2-201ENST00000504847 1145 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 RNU7-143P-201ENST00000516781 65 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 OR4R1P-201ENST00000529879 463 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 OR8R1P-201ENST00000543943 764 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AP005205.1-201ENST00000563503 508 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC106785.1-201ENST00000565935 262 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 MIR1254-2-201ENST00000579553 63 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AC093788.1-201ENST00000609356 927 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AL136964.1-201ENST00000622038 2990 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 FER-210ENST00000628534 558 ntTSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 DDX10P1-201ENST00000448545 1933 ntBASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTCHD3Q3KNS1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
PTCHD3Q3KNS1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms