Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC019097.1-201ENST00000424783 735 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA3P55318 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA3P55318 MTND4LP10-201ENST00000435146 291 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 FABP5P3-201ENST00000437960 408 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 RAB11AP1-201ENST00000442978 646 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA3P55318 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 RNU6-420P-201ENST00000458780 107 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA3P55318 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.6□□□□□ -2.15
FOXA3P55318 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.6□□□□□ -2.15
FOXA3P55318 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 MTCYBP20-201ENST00000524239 1129 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 OR5AQ1P-201ENST00000527596 927 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 OR11H5P-201ENST00000554039 926 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA3P55318 ANP32BP3-201ENST00000559213 706 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA3P55318 MTCO1P40-201ENST00000574371 625 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC009314.1-201ENST00000603871 304 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC007621.1-201ENST00000604544 437 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC010738.1-201ENST00000604970 987 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 MIR92B-201ENST00000607575 96 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC103710.4-201ENST00000609301 899 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AL162373.1-201ENST00000620433 407 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC073308.1-201ENST00000623696 305 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC091932.3-201ENST00000624223 323 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA3P55318 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA3P55318 AC119674.1-220ENST00000641502 1048 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 Z99496.1-201ENST00000469424 1477 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 DDX10P1-201ENST00000448545 1933 ntBASIC1.6□□□□□ -2.15
FOXA3P55318 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
FOXA3P55318 AC130650.2-201ENST00000618736 2403 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 GNG5P1-201ENST00000255500 204 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 ANKRD36P1-201ENST00000344424 659 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 RNU6-819P-201ENST00000364116 107 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 RNU6-270P-201ENST00000364131 105 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 SNORD46.1-201ENST00000364139 104 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 SNORA16B-201ENST00000364674 135 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 RNU6-921P-201ENST00000384361 107 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 MIR649-201ENST00000384843 97 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 MIR7-1-201ENST00000384871 110 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA3P55318 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.59□□□□□ -2.15
FOXA3P55318 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.59□□□□□ -2.15
FOXA3P55318 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA3P55318 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA3P55318 AC063976.3-201ENST00000426849 329 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 MYL8P-204ENST00000431574 518 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA3P55318 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC1.59□□□□□ -2.15
FOXA3P55318 MTCO2P9-201ENST00000503214 694 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AC234781.5-201ENST00000508429 271 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AC008413.1-201ENST00000511864 177 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 RNA5SP148-201ENST00000516527 94 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AC104997.1-201ENST00000519761 717 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 MAL2-205ENST00000521048 575 ntTSL 4 BASIC1.59□□□□□ -2.15
FOXA3P55318 HAUS1P3-201ENST00000523909 662 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA3P55318 GTF3AP2-201ENST00000557014 266 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AC027176.1-201ENST00000560204 514 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA3P55318 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA3P55318 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA3P55318 AC242628.1-201ENST00000606810 391 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AP001486.3-201ENST00000615334 372 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 uc_338.20-201ENST00000621563 178 ntBASIC1.59□□□□□ -2.15
FOXA3P55318 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.59□□□□□ -2.15
FOXA3P55318 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA3P55318 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC1.59□□□□□ -2.15
FOXA3P55318 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.59□□□□□ -2.16
FOXA3P55318 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
FOXA3P55318 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.59□□□□□ -2.16
FOXA3P55318 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA3P55318 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
FOXA3P55318 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA3P55318 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA3P55318 RNU6-152P-201ENST00000384037 107 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 MIR221-201ENST00000385135 110 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
FOXA3P55318 MIR1290-201ENST00000408735 78 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 RNA5SP80-201ENST00000410475 111 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 RPL17P12-201ENST00000413391 526 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 UBE2Q2P12-201ENST00000414573 204 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA3P55318 USP12PX-201ENST00000432383 1057 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 AL606490.8-201ENST00000441624 319 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 XKRY2-201ENST00000442362 1093 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 MTND1P33-201ENST00000446251 917 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 AC092155.2-201ENST00000454675 477 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA3P55318 AC090453.1-201ENST00000495560 436 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms