Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX1P28360 IGBP1P1-201ENST00000554337 1009 ntBASIC5.24□□□□□ -1.57
MSX1P28360 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX1P28360 SNORD91B-202ENST00000608459 222 ntBASIC5.24□□□□□ -1.57
MSX1P28360 RMST_4.1-201ENST00000616886 107 ntBASIC5.24□□□□□ -1.57
MSX1P28360 RN7SL544P-201ENST00000617232 284 ntBASIC5.24□□□□□ -1.57
MSX1P28360 RN7SL763P-201ENST00000620922 284 ntBASIC5.24□□□□□ -1.57
MSX1P28360 AC074140.1-201ENST00000621617 208 ntBASIC5.24□□□□□ -1.57
MSX1P28360 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX1P28360 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX1P28360 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX1P28360 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
MSX1P28360 PRO1804-201ENST00000623780 2050 ntBASIC5.24□□□□□ -1.57
MSX1P28360 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX1P28360 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX1P28360 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 RNU6-1179P-201ENST00000384667 107 ntBASIC5.23□□□□□ -1.57
MSX1P28360 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
MSX1P28360 RNA5SP91-201ENST00000390902 119 ntBASIC5.23□□□□□ -1.57
MSX1P28360 RPL21P67-201ENST00000402896 478 ntBASIC5.23□□□□□ -1.57
MSX1P28360 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX1P28360 BX679664.1-201ENST00000434429 253 ntBASIC5.23□□□□□ -1.57
MSX1P28360 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX1P28360 RANP8-201ENST00000444720 713 ntBASIC5.23□□□□□ -1.57
MSX1P28360 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.23□□□□□ -1.57
MSX1P28360 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 SEPT14P8-201ENST00000508026 178 ntBASIC5.23□□□□□ -1.57
MSX1P28360 RNA5SP34-201ENST00000516887 130 ntBASIC5.23□□□□□ -1.57
MSX1P28360 AC007458.1-201ENST00000542812 373 ntBASIC5.23□□□□□ -1.57
MSX1P28360 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX1P28360 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX1P28360 BDH2P1-201ENST00000602288 736 ntBASIC5.23□□□□□ -1.57
MSX1P28360 MIR6730-201ENST00000622213 67 ntBASIC5.23□□□□□ -1.57
MSX1P28360 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX1P28360 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
MSX1P28360 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX1P28360 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX1P28360 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.22□□□□□ -1.57
MSX1P28360 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
MSX1P28360 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 AL159987.1-201ENST00000347911 293 ntBASIC5.22□□□□□ -1.57
MSX1P28360 SNORA64.1-201ENST00000362600 132 ntBASIC5.22□□□□□ -1.57
MSX1P28360 Y_RNA.76-201ENST00000362931 109 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RNU6-1155P-201ENST00000363554 107 ntBASIC5.22□□□□□ -1.57
MSX1P28360 SNORA74A-201ENST00000364089 198 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RNU6-740P-201ENST00000364734 105 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RNU1-136P-201ENST00000384181 164 ntBASIC5.22□□□□□ -1.57
MSX1P28360 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
MSX1P28360 RPL21P75-201ENST00000396599 483 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RPL21P28-201ENST00000401418 483 ntBASIC5.22□□□□□ -1.57
MSX1P28360 AL133388.1-201ENST00000404509 287 ntBASIC5.22□□□□□ -1.57
MSX1P28360 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.22□□□□□ -1.57
MSX1P28360 MTCYBP2-201ENST00000407745 171 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RNA5SP56-201ENST00000410277 118 ntBASIC5.22□□□□□ -1.57
MSX1P28360 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 AL590556.1-201ENST00000423231 483 ntBASIC5.22□□□□□ -1.57
MSX1P28360 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.22□□□□□ -1.57
MSX1P28360 AL590399.2-201ENST00000427536 309 ntBASIC5.22□□□□□ -1.57
MSX1P28360 USP9YP7-201ENST00000436723 430 ntBASIC5.22□□□□□ -1.57
MSX1P28360 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX1P28360 AL390119.1-201ENST00000440329 312 ntBASIC5.22□□□□□ -1.57
MSX1P28360 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 USP9YP32-201ENST00000452432 430 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RPL10P17-201ENST00000453852 316 ntBASIC5.22□□□□□ -1.57
MSX1P28360 U8.21-201ENST00000459536 136 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RPL21P11-201ENST00000461458 483 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RPL21P39-201ENST00000463605 483 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RN7SL515P-201ENST00000463999 297 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RN7SL799P-201ENST00000475891 298 ntBASIC5.22□□□□□ -1.57
MSX1P28360 AC132942.1-201ENST00000486753 483 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RPS15AP34-201ENST00000487776 387 ntBASIC5.22□□□□□ -1.57
MSX1P28360 AC093591.1-201ENST00000491435 481 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RPL21P16-201ENST00000495531 483 ntBASIC5.22□□□□□ -1.57
MSX1P28360 RNU6-1095P-201ENST00000516148 108 ntBASIC5.22□□□□□ -1.57
MSX1P28360 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms