Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.28□□□□□ -1.72
COL3A1P02461 SPATA2P1-201ENST00000431223 2055 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
COL3A1P02461 RNU5E-5P-201ENST00000365379 116 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 Y_RNA.500-201ENST00000384466 111 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 Y_RNA.529-201ENST00000384586 119 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 USP9YP27-201ENST00000418455 438 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 MTCO1P20-201ENST00000425366 358 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 AC073464.1-201ENST00000429823 534 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.28□□□□□ -1.72
COL3A1P02461 NIPA2P5-201ENST00000452282 464 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.28□□□□□ -1.72
COL3A1P02461 UBE2DNL-203ENST00000474922 222 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.28□□□□□ -1.72
COL3A1P02461 RPL7P42-201ENST00000481005 679 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 RPL32P34-201ENST00000486380 400 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.28□□□□□ -1.72
COL3A1P02461 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 AC090136.1-201ENST00000520009 240 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.28□□□□□ -1.72
COL3A1P02461 ARL2BPP5-201ENST00000523141 481 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.28□□□□□ -1.72
COL3A1P02461 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.28□□□□□ -1.72
COL3A1P02461 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 AL359535.1-201ENST00000612100 1087 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 AC093838.1-201ENST00000613014 469 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 AC136475.10-201ENST00000620253 385 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 AC002550.2-201ENST00000621246 394 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
COL3A1P02461 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 AL031985.3-201ENST00000565390 2449 ntBASIC4.28□□□□□ -1.72
COL3A1P02461 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL3A1P02461 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL3A1P02461 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL3A1P02461 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.27□□□□□ -1.73
COL3A1P02461 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL3A1P02461 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL3A1P02461 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL3A1P02461 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL3A1P02461 RNU6-1263P-201ENST00000384601 106 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 MIR128-1-201ENST00000384921 82 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 RNU6-77P-201ENST00000410554 91 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.27□□□□□ -1.73
COL3A1P02461 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 MTCYBP45-201ENST00000435243 565 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 AL138787.1-202ENST00000437804 898 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 PPIAP17-201ENST00000438507 471 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.27□□□□□ -1.73
COL3A1P02461 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL3A1P02461 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.27□□□□□ -1.73
COL3A1P02461 RNU6-1308P-201ENST00000516817 103 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 RN7SKP289-201ENST00000517244 295 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 AC087276.1-201ENST00000529659 480 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 AC015917.1-201ENST00000579654 510 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.27□□□□□ -1.73
COL3A1P02461 NRBF2P5-201ENST00000603087 788 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 AP001506.1-201ENST00000615444 211 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 AC073348.1-201ENST00000623002 331 ntBASIC4.27□□□□□ -1.73
COL3A1P02461 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL3A1P02461 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.27□□□□□ -1.73
COL3A1P02461 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.26□□□□□ -1.73
COL3A1P02461 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL3A1P02461 RNU5F-6P-201ENST00000362979 116 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 Y_RNA.142-201ENST00000363491 102 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 RNU6-1339P-201ENST00000363574 91 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 RNU6-1090P-201ENST00000364065 94 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 MIR1284-201ENST00000408337 120 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL3A1P02461 AC007390.1-201ENST00000415722 356 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.26□□□□□ -1.73
COL3A1P02461 ZNF90P2-204ENST00000419323 1075 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 RABEPKP1-201ENST00000440529 1026 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 AL022238.1-201ENST00000442557 355 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 CALM1P2-201ENST00000452941 448 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.26□□□□□ -1.73
COL3A1P02461 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.26□□□□□ -1.73
COL3A1P02461 AC011352.3-201ENST00000505162 593 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.26□□□□□ -1.73
COL3A1P02461 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.26□□□□□ -1.73
COL3A1P02461 RN7SKP116-201ENST00000516902 319 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 RNU6-430P-201ENST00000517078 107 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.26□□□□□ -1.73
COL3A1P02461 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.26□□□□□ -1.73
COL3A1P02461 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.26□□□□□ -1.73
COL3A1P02461 FAM92A1P1-201ENST00000528023 890 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 AP002748.2-201ENST00000528671 348 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 OR4A45P-201ENST00000529954 901 ntBASIC4.26□□□□□ -1.73
COL3A1P02461 ARL2BPP2-201ENST00000550907 489 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 213.9 ms