Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
HIF3AQ9Y2N7 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 RNU4-50P-201ENST00000364361 141 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 RNU6-790P-201ENST00000384479 105 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 SNORD73A-201ENST00000386062 65 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 RNA5SP241-201ENST00000391326 114 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 MIR548H3-201ENST00000408771 118 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AP000275.1-201ENST00000411943 390 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AL662874.1-201ENST00000426065 230 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 RPL7P2-201ENST00000427639 268 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC016712.1-201ENST00000431088 378 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 MYL8P-204ENST00000431574 518 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AL121871.1-201ENST00000443413 436 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AL591623.2-201ENST00000449978 222 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC090602.1-201ENST00000469695 252 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC069499.1-201ENST00000489433 509 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 RN7SL290P-201ENST00000578661 300 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AP005403.1-201ENST00000579720 229 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 VN1R91P-201ENST00000594377 169 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 ANKRD36BP1-201ENST00000358576 1779 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.91□□□□□ -1.62
HIF3AQ9Y2N7 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.62
HIF3AQ9Y2N7 AC090971.4-201ENST00000560291 1800 ntBASIC4.9□□□□□ -1.62
HIF3AQ9Y2N7 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.9□□□□□ -1.62
HIF3AQ9Y2N7 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.9□□□□□ -1.62
HIF3AQ9Y2N7 AL049555.1-201ENST00000562834 1933 ntBASIC4.9□□□□□ -1.62
HIF3AQ9Y2N7 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HIF3AQ9Y2N7 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
HIF3AQ9Y2N7 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 RNA5SP46-201ENST00000362370 120 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.65-201ENST00000362846 100 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 RNA5SP435-201ENST00000364044 108 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.471-201ENST00000384312 102 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.518-201ENST00000384552 113 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 BMS1P17-202ENST00000416720 316 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 MRPL48P1-201ENST00000445390 636 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC008264.1-201ENST00000447612 367 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 FCF1P4-201ENST00000448326 183 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC090804.1-201ENST00000448870 490 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC098869.1-201ENST00000481627 292 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC098976.1-201ENST00000513014 541 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.700-201ENST00000516806 100 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 RN7SKP60-201ENST00000516985 239 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC090151.1-201ENST00000520784 730 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC067852.3-201ENST00000589177 561 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC006272.2-201ENST00000594725 163 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AP000769.2-201ENST00000602344 396 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AL390123.1-201ENST00000603216 237 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC007619.2-201ENST00000605743 379 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC244107.2-201ENST00000611773 76 ntBASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HIF3AQ9Y2N7 IRF5P1-201ENST00000504852 2164 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AC008079.2-201ENST00000623543 20396 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms