Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 FABP5P13-201ENST00000452144 328 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 TRBV1-201ENST00000476502 284 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 OR52A4P-203ENST00000498233 1014 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 RAC1P5-201ENST00000512182 576 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC092470.1-201ENST00000546187 132 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 ACTR3BP3-201ENST00000565577 979 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC093838.1-201ENST00000613014 469 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 TAS2R15P-201ENST00000390674 928 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 MIR764-201ENST00000390811 85 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 RNA5SP252-201ENST00000391131 119 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 FABP5P3-201ENST00000437960 408 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC025033.1-201ENST00000463883 194 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 RNU6-237P-201ENST00000515985 71 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 LY96-202ENST00000518893 430 ntTSL 3 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 ISCA1P3-201ENST00000577104 373 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 CBX3P2-202ENST00000583365 535 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC010738.1-201ENST00000604970 987 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC009570.1-201ENST00000609599 745 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC007275.1-201ENST00000621243 671 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AC099654.7-201ENST00000635788 2127 ntBASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AL359893.1-201ENST00000447628 1580 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 RNU6-173P-201ENST00000364215 104 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 RN7SKP226-201ENST00000364912 300 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 MIR421-201ENST00000365696 85 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 RNU6-1151P-201ENST00000384684 107 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 MIR7-1-201ENST00000384871 110 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 MIR144-201ENST00000384886 86 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AL136372.1-201ENST00000403060 228 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 MRPS33P4-201ENST00000434892 317 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 HMGB1P18-201ENST00000438801 619 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AC068135.1-201ENST00000446164 246 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 RPL38P4-201ENST00000502376 214 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AC087272.1-201ENST00000523624 533 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 MED28P6-201ENST00000558776 231 ntBASIC1.8□□□□□ -2.12
SCN3AQ9NY46 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SCN3AQ9NY46 RNU6-452P-201ENST00000384406 107 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 HSFY3P-201ENST00000444242 1191 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 RPS29P20-201ENST00000489592 171 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 RPL37P25-201ENST00000507308 276 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 VTRNA2-2P-201ENST00000516091 103 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 CIR1P1-201ENST00000524055 1133 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AP001804.3-201ENST00000525146 880 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AP004247.3-201ENST00000608682 624 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC092881.1-201ENST00000638218 2733 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 SET-203ENST00000372688 801 ntTSL 2 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 SNORA1.3-201ENST00000384676 136 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 RNU6-837P-201ENST00000391056 108 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 RNU2-20P-201ENST00000410425 191 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 EIF1AXP1-201ENST00000419267 435 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AL606495.1-201ENST00000422100 813 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 WARS2P1-201ENST00000429678 537 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AL591806.2-201ENST00000433122 173 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 IFNA11P-201ENST00000446352 526 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms