Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 SETP2-201ENST00000553886 926 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 CYCSP2-201ENST00000558168 301 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 MIR4509-3-201ENST00000578671 94 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 MIR4509-2-201ENST00000583920 94 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC105224.1-201ENST00000587055 421 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 BBIP1P1-201ENST00000602999 279 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 DUXAP3-201ENST00000603616 594 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AL157392.4-201ENST00000609756 345 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 MIR4509-1-201ENST00000618224 94 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC010608.3-201ENST00000625048 527 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS35Q96QK1 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS35Q96QK1 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 MAPK10-322ENST00000641485 4530 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 RNU1-140P-201ENST00000365040 165 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 SNORD116.1-201ENST00000365628 92 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 SNORA48.5-201ENST00000391143 135 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC245054.2-201ENST00000415639 319 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 RPL26P6-201ENST00000440913 438 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 RSL24D1P3-201ENST00000449255 495 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 snoU13.8-201ENST00000458890 104 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 S100A11P2-201ENST00000467589 312 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 RPL31P50-201ENST00000471002 296 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AL359273.1-201ENST00000510918 627 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC079395.1-201ENST00000510981 262 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC109445.1-201ENST00000512356 383 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 SNORA74D-201ENST00000516404 141 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 MIR3921-201ENST00000577308 85 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC011260.1-201ENST00000578420 472 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 MIR3200-201ENST00000580767 85 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 AL450472.3-201ENST00000615578 367 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 AC116618.1-201ENST00000634617 774 ntBASIC2.98□□□□□ -1.93
VPS35Q96QK1 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS35Q96QK1 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC092447.7-201ENST00000422212 1621 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS35Q96QK1 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS35Q96QK1 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS35Q96QK1 Y_RNA.192-201ENST00000363977 102 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 RNU4-68P-201ENST00000364314 141 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 SNORA14A-201ENST00000364773 135 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 Y_RNA.465-201ENST00000384293 102 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 RNU6-925P-201ENST00000384629 104 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 Y_RNA.548-201ENST00000384656 105 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 MIR1284-201ENST00000408337 120 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 ATP5F1P1-201ENST00000433775 569 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC002381.1-201ENST00000447049 280 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 UQCRHP3-201ENST00000451503 251 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 RPL21P134-201ENST00000453468 483 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 RN7SL75P-201ENST00000461926 281 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AL049714.1-201ENST00000466686 347 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 FAM172BP-201ENST00000487497 1089 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC119751.4-201ENST00000507498 357 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 RNU6-150P-201ENST00000516237 95 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC239860.2-201ENST00000525886 270 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 OR6C7P-201ENST00000547875 934 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC004987.4-201ENST00000603383 338 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AL162274.2-201ENST00000614406 332 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC090772.4-201ENST00000623599 362 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 AP001002.2-201ENST00000625137 386 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms