Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC244035.1-201ENST00000430042 390 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 EEF1B2P7-201ENST00000451177 676 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 HIGD1AP18-201ENST00000520730 278 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 UBTFL10-201ENST00000528532 562 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 SNRPGP18-201ENST00000553000 214 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 HMGB1P6-201ENST00000569046 646 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AL773524.1-201ENST00000614065 229 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 ATP5A1P2-202ENST00000616464 443 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC010378.1-201ENST00000619270 362 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 MTCO1P12-201ENST00000414273 1543 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 RNU1-140P-201ENST00000365040 165 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 MIR621-201ENST00000384919 96 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 MIR150-201ENST00000385048 84 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 MIR934-201ENST00000401241 83 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AL589655.1-201ENST00000405398 482 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 EZH2P1-201ENST00000431167 291 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 VN1R108P-201ENST00000431580 830 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AL159987.2-201ENST00000432754 307 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 NDUFB4P6-201ENST00000436819 366 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 DNAJC19P4-201ENST00000440115 345 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC016691.1-201ENST00000441321 413 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 HMGN2P10-201ENST00000448085 265 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 BX510359.1-201ENST00000456973 237 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 RPS29P22-201ENST00000472363 168 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC107398.1-201ENST00000486904 505 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC008834.1-201ENST00000511612 175 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 RNA5SP281-201ENST00000516504 135 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 CDH12P4-201ENST00000517835 295 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 CDH12P3-201ENST00000517935 295 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 CDH12P1-201ENST00000518435 295 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AL355877.2-201ENST00000603670 358 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 HOTTIP_4.1-201ENST00000618195 165 ntBASIC1.01□□□□□ -2.25
LINC00643Q86TS7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
LINC00643Q86TS7 RNA5SP435-201ENST00000364044 108 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1□□□□□ -2.25
LINC00643Q86TS7 AL356131.1-201ENST00000405826 414 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 RPS15AP38-201ENST00000413110 372 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1□□□□□ -2.25
LINC00643Q86TS7 AC069157.1-201ENST00000421749 137 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1□□□□□ -2.25
LINC00643Q86TS7 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC1□□□□□ -2.25
LINC00643Q86TS7 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1□□□□□ -2.25
LINC00643Q86TS7 TRIM60P9Y-201ENST00000438459 816 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AC105272.1-201ENST00000438604 198 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 TRIM60P11Y-201ENST00000445313 801 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 PDSS1P2-201ENST00000449397 678 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 RPS29P23-201ENST00000458635 123 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 RPS4XP10-201ENST00000465034 731 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1□□□□□ -2.25
LINC00643Q86TS7 RN7SL741P-201ENST00000482473 289 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1□□□□□ -2.25
LINC00643Q86TS7 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1□□□□□ -2.25
LINC00643Q86TS7 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1□□□□□ -2.25
LINC00643Q86TS7 SETP12-201ENST00000514068 805 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1□□□□□ -2.25
LINC00643Q86TS7 AC084851.1-201ENST00000529105 249 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AC118273.2-201ENST00000532092 465 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1□□□□□ -2.25
LINC00643Q86TS7 AC022069.1-201ENST00000582910 658 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1□□□□□ -2.25
LINC00643Q86TS7 MTCO2P22-201ENST00000603246 681 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 SNRPGP19-201ENST00000603826 189 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 SEPT7P9-203ENST00000604116 343 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AC006338.2-201ENST00000616864 791 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 AL356266.1-201ENST00000623311 483 ntBASIC1□□□□□ -2.25
LINC00643Q86TS7 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AL513185.3-201ENST00000433335 1300 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms