Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6-398P-201ENST00000384143 109 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 MIR454-201ENST00000390180 115 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.04□□□□□ -1.6
SF3A1Q15459 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SF3A1Q15459 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SF3A1Q15459 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.04□□□□□ -1.6
SF3A1Q15459 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.04□□□□□ -1.6
SF3A1Q15459 AL451054.2-201ENST00000420896 202 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.04□□□□□ -1.6
SF3A1Q15459 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC5.04□□□□□ -1.6
SF3A1Q15459 DNAJC19P7-201ENST00000428811 344 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AL356867.1-201ENST00000429623 299 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 HMGB1P27-201ENST00000431429 603 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AL596276.1-201ENST00000434465 418 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC5.04□□□□□ -1.6
SF3A1Q15459 RPS29P15-201ENST00000458329 171 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 MRPS17P3-201ENST00000465453 385 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 RPL31P60-201ENST00000478450 367 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 RPS4XP13-201ENST00000483219 789 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.04□□□□□ -1.6
SF3A1Q15459 AC015795.1-201ENST00000513669 327 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 RNU6-1281P-201ENST00000516223 105 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 SNORD27.1-201ENST00000516319 72 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.04□□□□□ -1.6
SF3A1Q15459 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.04□□□□□ -1.6
SF3A1Q15459 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.04□□□□□ -1.6
SF3A1Q15459 AP000827.1-201ENST00000527814 258 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 PHBP17-201ENST00000528576 541 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AC109635.3-201ENST00000529536 185 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AC007424.1-203ENST00000554613 687 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AL157687.1-201ENST00000554853 619 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AC034105.3-201ENST00000565294 442 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.04□□□□□ -1.6
SF3A1Q15459 AC069061.3-201ENST00000582254 823 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 MIR4801-201ENST00000582704 82 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AL109618.2-201ENST00000605527 211 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 AC068831.8-201ENST00000620171 435 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC5.04□□□□□ -1.6
SF3A1Q15459 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.04□□□□□ -1.6
SF3A1Q15459 MIR3688-2-201ENST00000636963 87 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.04□□□□□ -1.6
SF3A1Q15459 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.04□□□□□ -1.6
SF3A1Q15459 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SF3A1Q15459 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SF3A1Q15459 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SF3A1Q15459 AC011266.1-201ENST00000624119 3569 ntBASIC5.04□□□□□ -1.6
SF3A1Q15459 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC5.04□□□□□ -1.6
SF3A1Q15459 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SF3A1Q15459 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SF3A1Q15459 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SF3A1Q15459 Y_RNA.248-201ENST00000364501 109 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 RNU6-483P-201ENST00000384088 108 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 MIR1911-201ENST00000410783 80 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 JKAMPP1-201ENST00000413804 919 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC114491.1-201ENST00000416095 246 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 MTND1P23-201ENST00000416931 372 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AL139095.3-201ENST00000419672 1203 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 MTCO1P20-201ENST00000425366 358 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AL606489.2-201ENST00000433886 234 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.03□□□□□ -1.6
SF3A1Q15459 RPL36AP6-201ENST00000435770 321 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.03□□□□□ -1.6
SF3A1Q15459 DDX3P2-201ENST00000446138 111 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SF3A1Q15459 AL162591.2-201ENST00000449634 317 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 FDX1P2-201ENST00000450769 375 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 RNU7-182P-201ENST00000459009 62 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC104164.2-201ENST00000496953 495 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.03□□□□□ -1.6
SF3A1Q15459 AC108078.2-201ENST00000510750 236 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 RN7SKP258-201ENST00000517151 304 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 NRON-201ENST00000517270 370 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.03□□□□□ -1.6
SF3A1Q15459 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.03□□□□□ -1.6
SF3A1Q15459 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.03□□□□□ -1.6
SF3A1Q15459 AC090281.1-201ENST00000523019 276 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AP006587.4-201ENST00000526053 529 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC104383.1-201ENST00000530297 370 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.03□□□□□ -1.6
SF3A1Q15459 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.03□□□□□ -1.6
SF3A1Q15459 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.03□□□□□ -1.6
SF3A1Q15459 AC020910.2-201ENST00000603635 610 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 MIR6780A-201ENST00000615089 68 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC007014.2-201ENST00000615581 479 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC004825.2-201ENST00000616634 455 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AC025034.2-201ENST00000623264 286 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.03□□□□□ -1.6
SF3A1Q15459 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.03□□□□□ -1.6
SF3A1Q15459 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.03□□□□□ -1.6
SF3A1Q15459 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
SF3A1Q15459 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SF3A1Q15459 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SF3A1Q15459 SNORA24.1-201ENST00000384401 135 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 RNU6-606P-201ENST00000384721 111 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 MIR493-201ENST00000385254 89 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AL513331.1-201ENST00000411908 397 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 OR51A5P-201ENST00000415429 942 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 EIF4EP1-201ENST00000422311 642 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AL590383.1-201ENST00000428602 75 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms