Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC104435.1-201ENST00000483483 166 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 RPL23AP55-201ENST00000498163 452 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 GZMAP1-201ENST00000503054 631 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 AC117522.2-201ENST00000510049 657 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 AC105914.1-201ENST00000511798 226 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.83□□□□□ -2.12
CHD3Q12873 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.83□□□□□ -2.12
CHD3Q12873 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.83□□□□□ -2.12
CHD3Q12873 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CHD3Q12873 AC103810.1-201ENST00000579873 453 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC1.83□□□□□ -2.12
CHD3Q12873 AC006963.1-201ENST00000624003 1052 ntBASIC1.83□□□□□ -2.12
CHD3Q12873 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
CHD3Q12873 AC010680.1-201ENST00000590024 3590 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
CHD3Q12873 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CHD3Q12873 RNA5SP338-201ENST00000410495 85 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 MTND1P23-201ENST00000416931 372 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 CBWD4P-201ENST00000445695 655 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 AL034418.1-201ENST00000448675 860 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 AC233279.1-201ENST00000455300 423 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 RPS23P3-201ENST00000470993 430 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 RNA5SP200-201ENST00000516360 103 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 AC025857.1-201ENST00000525252 377 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD3Q12873 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CHD3Q12873 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC1.82□□□□□ -2.12
CHD3Q12873 AC009570.1-201ENST00000609599 745 ntBASIC1.82□□□□□ -2.12
CHD3Q12873 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CHD3Q12873 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CHD3Q12873 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CHD3Q12873 MTND5P28-201ENST00000438005 1594 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
CHD3Q12873 MIR378A-201ENST00000362177 66 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 MIR524-201ENST00000385242 87 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AC098826.1-201ENST00000433943 471 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AL031659.1-201ENST00000447075 539 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AC008885.2-201ENST00000509506 930 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC1.81□□□□□ -2.12
CHD3Q12873 AC008562.1-201ENST00000521763 330 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC1.81□□□□□ -2.12
CHD3Q12873 OR4K7P-201ENST00000580232 945 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AL022099.1-201ENST00000604551 712 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 APOOP1-201ENST00000604695 592 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AC245517.5-201ENST00000611529 162 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AC139769.3-201ENST00000618383 175 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AC020923.1-201ENST00000624021 917 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.81□□□□□ -2.12
CHD3Q12873 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CHD3Q12873 CKAP2P1-201ENST00000555477 2049 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.81□□□□□ -2.12
CHD3Q12873 RNU6-666P-201ENST00000363499 107 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 RNU6-335P-201ENST00000364563 113 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 SNORA25.9-201ENST00000365087 128 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1.81□□□□□ -2.12
CHD3Q12873 SNORA11.4-201ENST00000408823 129 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 PSMA2P3-201ENST00000429685 675 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.81□□□□□ -2.12
CHD3Q12873 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.81□□□□□ -2.12
CHD3Q12873 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.81□□□□□ -2.12
CHD3Q12873 MTCO3P11-201ENST00000455103 774 ntBASIC1.81□□□□□ -2.12
CHD3Q12873 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.81□□□□□ -2.12
CHD3Q12873 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.81□□□□□ -2.12
CHD3Q12873 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.8□□□□□ -2.12
CHD3Q12873 SET-203ENST00000372688 801 ntTSL 2 BASIC1.8□□□□□ -2.12
CHD3Q12873 MIR17-201ENST00000385012 84 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 MIR221-201ENST00000385135 110 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 SNORA26.9-201ENST00000391322 122 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 AC099677.1-201ENST00000420575 175 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.8□□□□□ -2.12
CHD3Q12873 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.8□□□□□ -2.12
CHD3Q12873 NDUFA5P4-201ENST00000436704 385 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 PGBD4P3-201ENST00000440731 581 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.8□□□□□ -2.12
CHD3Q12873 TAF9P1-201ENST00000445421 515 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.8□□□□□ -2.12
CHD3Q12873 TAF9P2-201ENST00000454958 515 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 SYPL1P1-201ENST00000473622 768 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 RNU6-1053P-201ENST00000515930 101 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 MIR514B-201ENST00000516774 80 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 AMZ2P1-203ENST00000565833 850 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 AC009127.3-201ENST00000570531 403 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 AC008739.2-201ENST00000597006 317 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC1.8□□□□□ -2.12
CHD3Q12873 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC1.8□□□□□ -2.12
CHD3Q12873 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
CHD3Q12873 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
CHD3Q12873 AC004520.1-201ENST00000608362 1413 ntBASIC1.8□□□□□ -2.12
CHD3Q12873 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.8□□□□□ -2.12
CHD3Q12873 RNY1P10-201ENST00000363268 113 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 MIR583-201ENST00000384846 75 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 MIR489-201ENST00000384923 84 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 192.9 ms