Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 NIFKP8-201ENST00000560500 874 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC103810.1-201ENST00000579873 453 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 FAM106DP-201ENST00000586416 501 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC016727.2-201ENST00000603988 621 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC1.13□□□□□ -2.23
COL7A1Q02388 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
COL7A1Q02388 AC034102.8-201ENST00000615146 484 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 STMN1P1-201ENST00000617809 440 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
COL7A1Q02388 SRIP3-201ENST00000413200 219 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.13□□□□□ -2.23
COL7A1Q02388 AL645568.3-201ENST00000433683 316 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.13□□□□□ -2.23
COL7A1Q02388 TPT1P14-201ENST00000448018 505 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC079776.3-201ENST00000450665 370 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 HMGB1P26-201ENST00000452520 628 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 RNA5SP395-201ENST00000516567 118 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC087241.2-201ENST00000535801 324 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 AC080078.3-201ENST00000605407 463 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 OR5AQ1P-203ENST00000641818 1529 ntBASIC1.13□□□□□ -2.23
COL7A1Q02388 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.13□□□□□ -2.23
COL7A1Q02388 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.13□□□□□ -2.23
COL7A1Q02388 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.12□□□□□ -2.23
COL7A1Q02388 RNA5SP139-201ENST00000364340 117 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 RAD23BP2-201ENST00000416003 1207 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC093084.1-201ENST00000424233 687 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC1.12□□□□□ -2.23
COL7A1Q02388 AC079203.1-201ENST00000487972 404 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
COL7A1Q02388 COX6CP5-201ENST00000527162 228 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.12□□□□□ -2.23
COL7A1Q02388 AL049779.4-201ENST00000604500 156 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC091895.1-201ENST00000624494 256 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC000367.1-201ENST00000452711 1766 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
COL7A1Q02388 RNA5SP62-201ENST00000363457 110 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 MIR517C-201ENST00000385103 95 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
COL7A1Q02388 RPS3AP44-201ENST00000425466 790 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.12□□□□□ -2.23
COL7A1Q02388 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
COL7A1Q02388 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
COL7A1Q02388 RPPH1-2P-201ENST00000516688 293 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.12□□□□□ -2.23
COL7A1Q02388 AP002967.1-201ENST00000624203 539 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
COL7A1Q02388 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
COL7A1Q02388 METTL21EP-201ENST00000298105 713 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 MIR520E-201ENST00000384867 87 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 FNDC3CP-201ENST00000420795 1155 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC023128.2-201ENST00000420880 1223 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.12□□□□□ -2.23
COL7A1Q02388 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC1.12□□□□□ -2.23
COL7A1Q02388 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.12□□□□□ -2.23
COL7A1Q02388 CYP3A137P-201ENST00000562436 69 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC068944.2-201ENST00000610373 403 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
COL7A1Q02388 FO624990.1-201ENST00000636373 85 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.12□□□□□ -2.23
COL7A1Q02388 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
COL7A1Q02388 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.11□□□□□ -2.23
COL7A1Q02388 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.11□□□□□ -2.23
COL7A1Q02388 RN7SKP101-201ENST00000411376 320 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.11□□□□□ -2.23
COL7A1Q02388 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.11□□□□□ -2.23
COL7A1Q02388 RFC5P1-201ENST00000454419 874 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AP002345.1-201ENST00000456493 928 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 RPS3AP22-201ENST00000488297 769 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC1.11□□□□□ -2.23
COL7A1Q02388 HMGN1P28-201ENST00000521340 364 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.11□□□□□ -2.23
COL7A1Q02388 RN7SL793P-201ENST00000583259 296 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AC007687.1-201ENST00000602704 304 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC1.11□□□□□ -2.23
COL7A1Q02388 RNU4-41P-201ENST00000364426 143 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 Y_RNA.471-201ENST00000384312 102 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 RNU6-1105P-201ENST00000384774 107 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.11□□□□□ -2.23
COL7A1Q02388 HMGB1P12-201ENST00000438594 598 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AL157827.1-201ENST00000447622 132 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
COL7A1Q02388 OR7L1P-201ENST00000456181 380 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 RN7SL274P-201ENST00000492268 272 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.11□□□□□ -2.23
COL7A1Q02388 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.11□□□□□ -2.23
COL7A1Q02388 RPL23AP78-201ENST00000599928 470 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AC025016.1-201ENST00000616746 682 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AC121761.2-201ENST00000617300 689 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.11□□□□□ -2.23
COL7A1Q02388 AL121594.5-201ENST00000631724 573 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
COL7A1Q02388 ZNF271P-202ENST00000465539 1970 ntBASIC1.11□□□□□ -2.23
COL7A1Q02388 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.1□□□□□ -2.23
COL7A1Q02388 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL7A1Q02388 MTCO1P14-201ENST00000441695 1559 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.1□□□□□ -2.23
COL7A1Q02388 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL7A1Q02388 Y_RNA.115-201ENST00000363272 98 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 HMGN1P14-201ENST00000412459 517 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 165.6 ms