Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL4A4P53420 RNU4-92P-201ENST00000363783 136 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 RNU6-694P-201ENST00000364071 147 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 RNU4-68P-201ENST00000364314 141 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 Y_RNA.472-201ENST00000384322 102 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 Y_RNA.517-201ENST00000384551 106 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 GSTA12P-201ENST00000402398 508 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 RNU2-6P-201ENST00000411404 190 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 MTND4P3-201ENST00000417829 541 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.74□□□□□ -1.97
COL4A4P53420 AL365203.2-201ENST00000423444 196 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.74□□□□□ -1.97
COL4A4P53420 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.74□□□□□ -1.97
COL4A4P53420 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 MRPL42P4-201ENST00000453267 443 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 MTCYBP1-201ENST00000454315 1119 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 RPL9P32-201ENST00000464118 620 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 RN7SL636P-201ENST00000497504 294 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC008565.1-201ENST00000509046 885 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 AF186190.1-201ENST00000517470 480 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 OR4A45P-201ENST00000529954 901 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.74□□□□□ -1.97
COL4A4P53420 AGGF1P4-201ENST00000568249 801 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AL354943.1-201ENST00000572103 781 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 MIR3915-201ENST00000578518 97 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC079610.2-201ENST00000604818 690 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC103810.6-201ENST00000606708 136 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC025588.4-201ENST00000615802 908 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
COL4A4P53420 AC010975.3-201ENST00000618727 978 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AL133370.2-201ENST00000619934 439 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC090617.9-201ENST00000623751 147 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 UGP2-231ENST00000627474 264 ntTSL 5 BASIC2.74□□□□□ -1.97
COL4A4P53420 MIR6733-201ENST00000635723 61 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.74□□□□□ -1.97
COL4A4P53420 CRYM-AS1-204ENST00000637983 556 ntBASIC2.74□□□□□ -1.97
COL4A4P53420 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.74□□□□□ -1.97
COL4A4P53420 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 RNU6-76P-201ENST00000384060 104 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 RNY3P14-201ENST00000384309 102 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 MIR27B-201ENST00000385129 97 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 TAF9BP2-201ENST00000400856 499 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 CYCSP45-201ENST00000402289 315 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC2.73□□□□□ -1.97
COL4A4P53420 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.73□□□□□ -1.97
COL4A4P53420 AC093151.1-201ENST00000427711 313 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 RPL23AP74-201ENST00000437246 471 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 MTATP6P13-201ENST00000438531 667 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC092393.1-201ENST00000439625 742 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 RPL34P26-201ENST00000445636 354 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 HIGD1AP2-201ENST00000446367 280 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 GAPDHP27-201ENST00000447427 1020 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.73□□□□□ -1.97
COL4A4P53420 AP002345.1-201ENST00000456493 928 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A4P53420 SYPL1P1-201ENST00000473622 768 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC126182.1-201ENST00000478134 357 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 GAPDHP39-201ENST00000481866 979 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC103975.1-201ENST00000482506 483 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.73□□□□□ -1.97
COL4A4P53420 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A4P53420 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A4P53420 AC093331.1-201ENST00000521474 169 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC100870.1-201ENST00000522035 505 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 OR4V1P-201ENST00000525394 1140 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC004923.2-201ENST00000529649 369 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AL512347.1-201ENST00000566420 503 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC095057.3-201ENST00000567102 1157 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC022069.1-201ENST00000582910 658 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 HMGB1P51-201ENST00000605166 638 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC008277.2-201ENST00000605196 797 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AL139286.2-201ENST00000606838 396 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC024060.1-201ENST00000607052 494 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AL135786.2-201ENST00000608422 615 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AL359740.1-201ENST00000624340 592 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 AC138915.3-201ENST00000562908 1389 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC005539.1-201ENST00000443768 1479 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.73□□□□□ -1.97
COL4A4P53420 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 RNU6-236P-201ENST00000363886 106 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A4P53420 AC008173.1-201ENST00000418901 264 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms