Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC106791.2-201ENST00000604680 391 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC007349.4-201ENST00000608114 532 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.06□□□□□ -1.92
SDC3O75056 AC245297.2-201ENST00000610119 565 ntBASIC3.06□□□□□ -1.92
SDC3O75056 TUG1_1.1-201ENST00000610654 145 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC013470.4-201ENST00000619978 986 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC090740.1-201ENST00000623193 2262 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC231657.1-201ENST00000624313 397 ntBASIC3.06□□□□□ -1.92
SDC3O75056 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SDC3O75056 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.06□□□□□ -1.92
SDC3O75056 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC3O75056 TAB3P1-202ENST00000452645 1634 ntBASIC3.05□□□□□ -1.92
SDC3O75056 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
SDC3O75056 SNORD15B-201ENST00000384714 146 ntBASIC3.05□□□□□ -1.92
SDC3O75056 MIR513B-201ENST00000385136 84 ntBASIC3.05□□□□□ -1.92
SDC3O75056 MTCYBP38-201ENST00000417160 1123 ntBASIC3.05□□□□□ -1.92
SDC3O75056 HSPE1P1-201ENST00000421494 318 ntBASIC3.05□□□□□ -1.92
SDC3O75056 AL953862.1-201ENST00000423016 168 ntBASIC3.05□□□□□ -1.92
SDC3O75056 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 AC108734.1-201ENST00000439549 399 ntBASIC3.05□□□□□ -1.92
SDC3O75056 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC3O75056 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC3O75056 USP9YP10-201ENST00000454868 628 ntBASIC3.05□□□□□ -1.92
SDC3O75056 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC3O75056 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC3O75056 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC3O75056 RPL7P18-201ENST00000478965 734 ntBASIC3.05□□□□□ -1.92
SDC3O75056 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 FAM60DP-201ENST00000524174 632 ntBASIC3.05□□□□□ -1.92
SDC3O75056 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.05□□□□□ -1.92
SDC3O75056 AC023050.2-201ENST00000544968 387 ntBASIC3.05□□□□□ -1.92
SDC3O75056 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.05□□□□□ -1.92
SDC3O75056 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC3O75056 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC3O75056 AC013444.2-201ENST00000603317 787 ntBASIC3.05□□□□□ -1.92
SDC3O75056 MIR6076-201ENST00000617521 113 ntBASIC3.05□□□□□ -1.92
SDC3O75056 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 AL445264.1-201ENST00000621719 171 ntBASIC3.05□□□□□ -1.92
SDC3O75056 AC110801.1-201ENST00000623590 212 ntBASIC3.05□□□□□ -1.92
SDC3O75056 AC091903.1-201ENST00000624322 454 ntBASIC3.05□□□□□ -1.92
SDC3O75056 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC3O75056 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SDC3O75056 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC3O75056 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SDC3O75056 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SDC3O75056 MIR148B-201ENST00000362252 99 ntBASIC3.04□□□□□ -1.92
SDC3O75056 MIR135A2-201ENST00000384854 100 ntBASIC3.04□□□□□ -1.92
SDC3O75056 RPS4XP3-201ENST00000398541 413 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AL031679.1-201ENST00000400616 525 ntBASIC3.04□□□□□ -1.92
SDC3O75056 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC3O75056 NDUFB4P5-201ENST00000415445 361 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC3O75056 TMEM167AP1-201ENST00000423409 219 ntBASIC3.04□□□□□ -1.92
SDC3O75056 USP9YP36-201ENST00000424581 829 ntBASIC3.04□□□□□ -1.92
SDC3O75056 DPPA2P1-201ENST00000428060 556 ntBASIC3.04□□□□□ -1.92
SDC3O75056 RPL21P40-201ENST00000428586 483 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AC024082.2-201ENST00000434771 238 ntBASIC3.04□□□□□ -1.92
SDC3O75056 RPS25P9-201ENST00000435591 252 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AC009969.1-201ENST00000438726 172 ntBASIC3.04□□□□□ -1.92
SDC3O75056 SDCBPP1-201ENST00000440192 890 ntBASIC3.04□□□□□ -1.92
SDC3O75056 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC3O75056 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC3O75056 AC091179.1-201ENST00000461606 579 ntBASIC3.04□□□□□ -1.92
SDC3O75056 RPL31P50-201ENST00000471002 296 ntBASIC3.04□□□□□ -1.92
SDC3O75056 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SDC3O75056 RPL30P14-201ENST00000482744 348 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AC108860.1-201ENST00000484521 383 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC3O75056 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC3O75056 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC3O75056 SNORA31.1-201ENST00000515993 133 ntBASIC3.04□□□□□ -1.92
SDC3O75056 SNORA31.5-201ENST00000516190 133 ntBASIC3.04□□□□□ -1.92
SDC3O75056 SNORA70.16-201ENST00000516390 95 ntBASIC3.04□□□□□ -1.92
SDC3O75056 SNORA64.4-201ENST00000516632 81 ntBASIC3.04□□□□□ -1.92
SDC3O75056 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.04□□□□□ -1.92
SDC3O75056 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
SDC3O75056 AGGF1P5-201ENST00000567900 919 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC3O75056 AL133393.1-201ENST00000603277 287 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AL592221.1-201ENST00000605266 382 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AL390208.1-201ENST00000605885 644 ntBASIC3.04□□□□□ -1.92
SDC3O75056 AC006270.3-201ENST00000605967 1036 ntBASIC3.04□□□□□ -1.92
SDC3O75056 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC3O75056 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC3O75056 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.04□□□□□ -1.92
SDC3O75056 AC000403.1-201ENST00000613696 3585 ntBASIC3.04□□□□□ -1.92
SDC3O75056 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
SDC3O75056 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
SDC3O75056 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms