Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AP001893.2-201ENST00000526949 202 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 MIR3167-201ENST00000579623 85 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AC017083.3-201ENST00000609955 700 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 AL356321.1-201ENST00000621360 228 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 HSPA8P1-201ENST00000425843 1833 ntBASIC3.98□□□□□ -1.77
VPS4AQ9UN37 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS4AQ9UN37 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 RNU6-356P-201ENST00000384140 107 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 RNU6-114P-201ENST00000384704 105 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 MIR19A-201ENST00000384878 82 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 MIR449B-201ENST00000384995 97 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 MRPL42P2-201ENST00000403169 426 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC233728.2-201ENST00000425348 757 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC133104.1-201ENST00000429100 218 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 YME1L1P1-201ENST00000429435 297 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AL451074.3-201ENST00000437709 472 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AL136380.1-201ENST00000447970 162 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 RPL7P49-201ENST00000471402 708 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 NIPA2P2-201ENST00000496376 1083 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC010587.1-201ENST00000505809 469 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 ARL4AP2-201ENST00000507378 601 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC008958.1-201ENST00000511047 682 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 RNU6-314P-201ENST00000516574 104 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 Vault.3-201ENST00000516676 95 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 FAM92A1P1-201ENST00000528023 890 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 OR4P1P-201ENST00000530808 1136 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AP000907.2-201ENST00000530827 353 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 MIR6867-201ENST00000610636 67 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 uc_338.12-201ENST00000616344 181 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AC009268.2-201ENST00000621925 457 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 AL356585.4-201ENST00000623078 1229 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 CR392039.5-201ENST00000623201 510 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 MIR6863-201ENST00000636112 90 ntBASIC3.97□□□□□ -1.77
VPS4AQ9UN37 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS4AQ9UN37 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.96□□□□□ -1.77
VPS4AQ9UN37 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS4AQ9UN37 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS4AQ9UN37 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
VPS4AQ9UN37 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
VPS4AQ9UN37 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS4AQ9UN37 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS4AQ9UN37 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 RNA5SP306-201ENST00000411087 107 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC092447.6-201ENST00000414578 210 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC069157.1-201ENST00000421749 137 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 MTCO2P19-201ENST00000427513 598 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC018644.1-201ENST00000429934 551 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 RPL31P35-201ENST00000431058 377 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC000111.3-201ENST00000433478 193 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 FTH1P1-201ENST00000437933 532 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 RPL23AP46-201ENST00000438548 490 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 MTCO3P20-201ENST00000454926 688 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 UBDP1-202ENST00000457888 382 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AL121769.1-201ENST00000469473 401 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 RPS3AP14-201ENST00000483907 780 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 SCARNA13-201ENST00000516672 275 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 RNU6-528P-201ENST00000516926 100 ntBASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS4AQ9UN37 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms